| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0928 |
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| Symbol | lpxC |
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| ID | 5108786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1048684 |
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| End bp | 1049595 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640502145 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_001186428 |
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| Protein GI | 146305963 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000124544 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.943478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAGAC AACGCACCCT GAAGAACATC ATCCGTGCCA CCGGCGTTGG CCTGCATTCG
GGGGAAAAGG TTTACCTGAC CCTGAAGCCG GCTCCGGTGG ATACCGGCAT CGTGTTCCGT
CGCACCGACC TCGACCCCAT CGTGGAAATT CGCGCATTGG CCGGGAATGT CGGTGAAACC
ACCATGTCGA CCACTCTGGT CAATGGTGAT GTCAAGGTGG ATACGGTAGA GCACCTGCTT
TCGGCCATGG CAGGCCTGGG CATCGATAAC GCCTACGTCG AGCTCTCCGC GTCCGAAGTG
CCGATCATGG ATGGCAGCGC CGGCCCCTTC GTATTCCTGA TTCAATCCGC TGGCCTGCAG
GAGCAGGAAG CGCCGAAGAA GTTCATCCGC ATCCTGCGTG AGGTCACGGT GGTGGAGGGC
GACAAGCGCG CCACCTTCGT GCCCTTCGAC GGATTCAAGG TGAGCTTCGA GATCGACTTC
GATCACCCCG TGTTCCGCAA TCGCACGCAG AGCGCCAGTG TGGATTTCTC GAGCACGTCT
TTCGTCAAGG AAGTCAGCCG GGCCCGCACC TTCGGTTTCA TGCGTGACAT CGAGTTCCTG
CGTTCGCAGA ACCTGGCGCT CGGTGGCAGT GTGGAAAACG CCATCGTGGT CGACGAGTAT
CGCGTGCTCA ACGAAGACGG CCTGCGTTAC GAGGACGAAT TCGTCAAACA TAAGATTCTC
GATGCAATCG GCGATCTGTA CCTGTTGGGT AACAGCCTGA TCGGCGAGTT CAAGGGCTTC
AAGTCGGGGC ATGCGCTGAA CAATCGCCTG CTGCGCACCC TGATCGAGCA GACCGATGCC
TGGGAAATGG TGACCTTCGA GGACGCCAAG CTCGCGCCGA TCTCCTACAT GCGCCCGGTA
GCGGCCGTGT AG
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| Protein sequence | MIRQRTLKNI IRATGVGLHS GEKVYLTLKP APVDTGIVFR RTDLDPIVEI RALAGNVGET
TMSTTLVNGD VKVDTVEHLL SAMAGLGIDN AYVELSASEV PIMDGSAGPF VFLIQSAGLQ
EQEAPKKFIR ILREVTVVEG DKRATFVPFD GFKVSFEIDF DHPVFRNRTQ SASVDFSSTS
FVKEVSRART FGFMRDIEFL RSQNLALGGS VENAIVVDEY RVLNEDGLRY EDEFVKHKIL
DAIGDLYLLG NSLIGEFKGF KSGHALNNRL LRTLIEQTDA WEMVTFEDAK LAPISYMRPV
AAV
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