| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0924 |
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| Symbol | ddl |
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| ID | 5108782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1044262 |
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| End bp | 1045203 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502141 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001186424 |
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| Protein GI | 146305959 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.783773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGC ACAGTAGCCT CGATCCCAAG GCTTTCGGTC GCGTCGCCGT GCTGTTCGGC
GGCAAGAGCG CCGAGCGCGA GGTGTCGCTG AAATCCGGCA ATGCCGTGCT CAGCGCCCTG
CAGGCGGCCG GGGTGGACGC CTTCGGCATC GACGTGGGCG ATGATTTCCT GCAGCGCCTT
GCCAGCGAGA AGATCGACCG CGCCTTCATC GTGCTGCACG GCCGCGGTGG CGAGGATGGC
TCCATGCAGG GCCTGCTCGA GTGCGCCGGC ATTCCCTACA CCGGCAGCGG CATCCTCGCC
TCGGCGCTGG CCATGGACAA GCTGCGTACC AAGCAGGTCT GGCACAGCCT CGGCCTGCCG
ACGCCGCGTC ACGCCGTGCT CACGTCGCAG GCCGACTGCG AAGCGGCGGC TGCCGAACTG
GGTTTCCCGC TGATCGTCAA GCCGGCCCAT GAAGGCTCCA GCATCGGCAT GGCCAAGGTC
GAGAGCGTCG AGGCGCTGAT CGCGGCCTGG CAGGACGCCG CGCGCTACGA CAGTCAGGTA
CTGGTCGAGC AGTGGATCGC CGGCCCCGAG TACACCGTGG CCGTGCTGCG TGGCGAAGTG
CTGCCGCCCA TTGGCCTGGG CACGCCGCAC AGCTTCTACG ACTACGACGC CAAGTACCTG
GCCGATGACA CCCAGTACCG CATTCCCTGC GGCCTCTCGG CCGAGAAGGA GGCGGAACTG
AAAGAGCTGA CCGCGCGCGC CTGCGAGGCC GTGGGCACCC AGGGCTGGGC GCGTGCAGAC
GTGATGCAGG ATGCCAGTGG CCAGTTCTGG CTGCTGGAAG TGAACACCGT ACCGGGCATG
ACCGATCACA GCCTGGTACC GATGGCCGCG CGCGCCGCCG GTCTGGATTT CCAGCAGCTG
GTACTGGCGA TCCTGGCCGA CAGCGTCGAG GCGAGGGGTT AA
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| Protein sequence | MSLHSSLDPK AFGRVAVLFG GKSAEREVSL KSGNAVLSAL QAAGVDAFGI DVGDDFLQRL
ASEKIDRAFI VLHGRGGEDG SMQGLLECAG IPYTGSGILA SALAMDKLRT KQVWHSLGLP
TPRHAVLTSQ ADCEAAAAEL GFPLIVKPAH EGSSIGMAKV ESVEALIAAW QDAARYDSQV
LVEQWIAGPE YTVAVLRGEV LPPIGLGTPH SFYDYDAKYL ADDTQYRIPC GLSAEKEAEL
KELTARACEA VGTQGWARAD VMQDASGQFW LLEVNTVPGM TDHSLVPMAA RAAGLDFQQL
VLAILADSVE ARG
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