| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0920 |
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| Symbol | murD |
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| ID | 5108778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1039216 |
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| End bp | 1040562 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502137 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001186420 |
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| Protein GI | 146305955 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.579625 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCTGA TCGCTTCCGA CCAGTTCCGC ATCGTTGTCG GCCTCGGCAA GAGCGGCATG
TCCCTGGTGC GCTTTTTCGC GCAGCAGGGC GTGCGCTTCG CCGTGGCCGA CACGCGCGCG
AACCCGCCGG AGCTGGACAC GCTCAAGCGT GACTACCCGC AGGTGGAAGT GCGTTGCGGC
GAGCTGGACG TGGAGTTCCT CTGCCGCGCC TCGGAGCTTT ACGTGAGCCC GGGCCTGGCC
ATTTCCACGC CCGCCCTGGC CGCGGCCGCC GCGCGCGGGG TCAAGCTGTC CGGCGATATC
GATCTGTTCG CCCGCCACGC CAAGGCGCCG ATCGTGGCCA TCACCGGCTC CAACGCCAAG
AGCACCGTTA CCACCCTGGT CGGCGAAATG GCCGCTGCAG CCGGCAAGCG CGTCGCCGTC
GGCGGCAACC TCGGCACGCC GGCGCTGGAT CTGCTGGCCG ACGATGTCGA GCTGTACGTG
CTGGAGCTGT CCAGCTTCCA GCTGGAGACC ACCGATCAGC TCAACGCCGA AGTGGCCACC
TGCCTCAACA TCAGCGAAGA CCACATGGAT CGCTACAGCG GTCTGCCGGC CTATCACCTG
GCCAAGCACC GCATCTTCCG CGGCGCGCGT CAGGTGGTGG TCAACCGCGA CGACGCCCTG
TCGCGTCCGC TGATCGCCGA TCAGGTGACC TGCTGGGAAT TCGGCCTGGG CAAACCGGAC
TTCAAACGCT TCGGTCTGCT CGAGGAAAAC GGCGAGAAGT CCCTGGCGTT TCGCTTCGAA
GCGCTGCTGC CGGTGAGCGA GCTGAAGATC CGCGGCGCGC ACAATCAGTC CAACGCCCTG
GCGGCGTTGG CGCTCGGCCA TGCCGTTGGC CTGCCGATGG AAGCCATGCT CGCCACCCTG
CGCCAGTTCG CCGGATTGCC GCATCGTTGC CAGTGGGTCG GCGAGCGCGC CGGGGTCAAT
TATTACGATG ATTCCAAGGC CACCAACGTC GGTGCCGCGC TGGCGGCCAT CGAAGGCCTC
GGTGCCGATA TCGCCGGCAA GCTGGTGCTG ATCGCCGGTG GCGACGGCAA AGGCGCCGAC
TTCTCCGCGC TGAAGGCGCC GGTGGCGCGA TTCTGCCGCG CCGTGGTGCT GCTCGGTCGC
GATGCCGAGC TGATCGCCGC CGCTCTGGGC GATGCCGCGC CGCTGGTGCG GGTGACAACC
CTGGACGAAG CGGTGCAGCG CTGCAGCGAA CTGGCAGAGG CTGGCGATGC CGTGCTGCTG
TCGCCGGCCT GCGCCAGCCT GGACATGTTC AAGAACTTCG AAGAGCGCGG GCGTCTGTTC
GCCCAGGCCG TGGGAGGGCT CGTCTGA
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| Protein sequence | MTLIASDQFR IVVGLGKSGM SLVRFFAQQG VRFAVADTRA NPPELDTLKR DYPQVEVRCG
ELDVEFLCRA SELYVSPGLA ISTPALAAAA ARGVKLSGDI DLFARHAKAP IVAITGSNAK
STVTTLVGEM AAAAGKRVAV GGNLGTPALD LLADDVELYV LELSSFQLET TDQLNAEVAT
CLNISEDHMD RYSGLPAYHL AKHRIFRGAR QVVVNRDDAL SRPLIADQVT CWEFGLGKPD
FKRFGLLEEN GEKSLAFRFE ALLPVSELKI RGAHNQSNAL AALALGHAVG LPMEAMLATL
RQFAGLPHRC QWVGERAGVN YYDDSKATNV GAALAAIEGL GADIAGKLVL IAGGDGKGAD
FSALKAPVAR FCRAVVLLGR DAELIAAALG DAAPLVRVTT LDEAVQRCSE LAEAGDAVLL
SPACASLDMF KNFEERGRLF AQAVGGLV
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