Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0918 |
Symbol | |
ID | 5108776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1036756 |
End bp | 1038126 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640502135 |
Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
Protein accession | YP_001186418 |
Protein GI | 146305953 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.117464 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTAAGC CCTGGCTGCT CAGCGAAATA GCGGCTGATC TCAGCGCGCG CCTGATCGGC GATGACGTCG CCTTCTCCGC CGTCGGCACC GACAGCCGTA CCATCGCCCC CGGCCAGTTG TTCGTGGCGC TGACCGGGCC GCGTTTCGAC GGCCATGACT ACCTGGCCGA GGTTGCCGCC AAGGGCGCGG TTGCCGCGCT GGTCGAGCGT GAAGTGGCCA ATGCGCCGCT GCCGCAACTG CTGGTGGCCG ATACCCGCCT GGCCCTTGGG CAGCTAGGGG CATTGAACCG TCAGGCATTC ACCGGCCCGC TGGCTGCCGT GACCGGCTCC AGCGGCAAGA CCAGCGTCAA GGAGATGCTC GCCGCCATTC TGCGCGCCGG CCTGAACGGC GCGGTGCTGG CCACCCGCGG TAACCTCAAC AATGATCTGG GCGCGCCGCT GACCCTGCTC GAACTGGCGC CGGAGCACCG CGCCGGGGTA ATCGAGCTGG GCGCCAACCA TGTCGGCGAG ATCGCCTACA CCGTCAGCCT GACCCGTCCG CAGGTGACCA TCATCACCAA TGCCGGCAAT GCCCATGTCG GCGAGTTCGG CGGGCCGGAG AAGATCGTCC AGGCCAAGGG CGAGATTCTC GAAGGCCTGG CGCAGGACGG CGTGGCCGTA CTGAATCTGG ACGACAAGGC CTTTTCCACC TGGCAGCGTC GCGCCGCCGG TCATCAGGTC CTGAGCTTCG CCTTGCGCGA CACCCGGGCC GACTTCCACG GCAGCGACCT GGCCCGCGAC GAGCGCGGTT GCCAGGGCTT CACCTTGCGT AGCCCGGTCG GTAGCGTGCG CATTCAGCTG AATCTGCTGG GCGAGCACAA CGTGGCCAAC GCCCTGGCCG CCTGCGCCGC CGCCCATGCC CTGGGCCTGC CGTTGGTCGC CATGGCCAAG GGCCTGGAAA ACCTGCAACC GGTCAAAGGC CGCGCCGTAG CGCAGCTGGC GCCGAACGGC ATGCGGGTGA TCGATGACAG TTACAACGCC AACCCCGTGT CGATGTGCGC GGCGGTGGAT ATACTCGCCG GCTTCTCCGG TCGCACCGTT CTGGTGCTGG GAGACATGGG CGAGCTGGGC GAGTGGGCCG AACAGGGCCA CCGCGATGTC GGCCGCCATG CCGCCGGCAA GGTCGACGCG CTCTATGCGG TCGGTCCGCT GATGCGCTTC GCTGTCGAGG AGTTCGGCTC AAAAGGCCGT CACTTCGTCG ACCAGGCCGA ACTGATCGAA GCACTTCGTG CCGAACAGGC CGGCAGCACA CTACTAATCA AGGGTTCACG CAGCGCTGCC ATGGACAAGG TCGTGGCGGC GCTGTGTGAC GTATCTGGGG AGATTCACTA A
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Protein sequence | MLKPWLLSEI AADLSARLIG DDVAFSAVGT DSRTIAPGQL FVALTGPRFD GHDYLAEVAA KGAVAALVER EVANAPLPQL LVADTRLALG QLGALNRQAF TGPLAAVTGS SGKTSVKEML AAILRAGLNG AVLATRGNLN NDLGAPLTLL ELAPEHRAGV IELGANHVGE IAYTVSLTRP QVTIITNAGN AHVGEFGGPE KIVQAKGEIL EGLAQDGVAV LNLDDKAFST WQRRAAGHQV LSFALRDTRA DFHGSDLARD ERGCQGFTLR SPVGSVRIQL NLLGEHNVAN ALAACAAAHA LGLPLVAMAK GLENLQPVKG RAVAQLAPNG MRVIDDSYNA NPVSMCAAVD ILAGFSGRTV LVLGDMGELG EWAEQGHRDV GRHAAGKVDA LYAVGPLMRF AVEEFGSKGR HFVDQAELIE ALRAEQAGST LLIKGSRSAA MDKVVAALCD VSGEIH
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