Gene Pmen_0918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0918 
Symbol 
ID5108776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1036756 
End bp1038126 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content67% 
IMG OID640502135 
ProductUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 
Protein accessionYP_001186418 
Protein GI146305953 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0770] UDP-N-acetylmuramyl pentapeptide synthase 
TIGRFAM ID[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.117464 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAAGC CCTGGCTGCT CAGCGAAATA GCGGCTGATC TCAGCGCGCG CCTGATCGGC 
GATGACGTCG CCTTCTCCGC CGTCGGCACC GACAGCCGTA CCATCGCCCC CGGCCAGTTG
TTCGTGGCGC TGACCGGGCC GCGTTTCGAC GGCCATGACT ACCTGGCCGA GGTTGCCGCC
AAGGGCGCGG TTGCCGCGCT GGTCGAGCGT GAAGTGGCCA ATGCGCCGCT GCCGCAACTG
CTGGTGGCCG ATACCCGCCT GGCCCTTGGG CAGCTAGGGG CATTGAACCG TCAGGCATTC
ACCGGCCCGC TGGCTGCCGT GACCGGCTCC AGCGGCAAGA CCAGCGTCAA GGAGATGCTC
GCCGCCATTC TGCGCGCCGG CCTGAACGGC GCGGTGCTGG CCACCCGCGG TAACCTCAAC
AATGATCTGG GCGCGCCGCT GACCCTGCTC GAACTGGCGC CGGAGCACCG CGCCGGGGTA
ATCGAGCTGG GCGCCAACCA TGTCGGCGAG ATCGCCTACA CCGTCAGCCT GACCCGTCCG
CAGGTGACCA TCATCACCAA TGCCGGCAAT GCCCATGTCG GCGAGTTCGG CGGGCCGGAG
AAGATCGTCC AGGCCAAGGG CGAGATTCTC GAAGGCCTGG CGCAGGACGG CGTGGCCGTA
CTGAATCTGG ACGACAAGGC CTTTTCCACC TGGCAGCGTC GCGCCGCCGG TCATCAGGTC
CTGAGCTTCG CCTTGCGCGA CACCCGGGCC GACTTCCACG GCAGCGACCT GGCCCGCGAC
GAGCGCGGTT GCCAGGGCTT CACCTTGCGT AGCCCGGTCG GTAGCGTGCG CATTCAGCTG
AATCTGCTGG GCGAGCACAA CGTGGCCAAC GCCCTGGCCG CCTGCGCCGC CGCCCATGCC
CTGGGCCTGC CGTTGGTCGC CATGGCCAAG GGCCTGGAAA ACCTGCAACC GGTCAAAGGC
CGCGCCGTAG CGCAGCTGGC GCCGAACGGC ATGCGGGTGA TCGATGACAG TTACAACGCC
AACCCCGTGT CGATGTGCGC GGCGGTGGAT ATACTCGCCG GCTTCTCCGG TCGCACCGTT
CTGGTGCTGG GAGACATGGG CGAGCTGGGC GAGTGGGCCG AACAGGGCCA CCGCGATGTC
GGCCGCCATG CCGCCGGCAA GGTCGACGCG CTCTATGCGG TCGGTCCGCT GATGCGCTTC
GCTGTCGAGG AGTTCGGCTC AAAAGGCCGT CACTTCGTCG ACCAGGCCGA ACTGATCGAA
GCACTTCGTG CCGAACAGGC CGGCAGCACA CTACTAATCA AGGGTTCACG CAGCGCTGCC
ATGGACAAGG TCGTGGCGGC GCTGTGTGAC GTATCTGGGG AGATTCACTA A
 
Protein sequence
MLKPWLLSEI AADLSARLIG DDVAFSAVGT DSRTIAPGQL FVALTGPRFD GHDYLAEVAA 
KGAVAALVER EVANAPLPQL LVADTRLALG QLGALNRQAF TGPLAAVTGS SGKTSVKEML
AAILRAGLNG AVLATRGNLN NDLGAPLTLL ELAPEHRAGV IELGANHVGE IAYTVSLTRP
QVTIITNAGN AHVGEFGGPE KIVQAKGEIL EGLAQDGVAV LNLDDKAFST WQRRAAGHQV
LSFALRDTRA DFHGSDLARD ERGCQGFTLR SPVGSVRIQL NLLGEHNVAN ALAACAAAHA
LGLPLVAMAK GLENLQPVKG RAVAQLAPNG MRVIDDSYNA NPVSMCAAVD ILAGFSGRTV
LVLGDMGELG EWAEQGHRDV GRHAAGKVDA LYAVGPLMRF AVEEFGSKGR HFVDQAELIE
ALRAEQAGST LLIKGSRSAA MDKVVAALCD VSGEIH