| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0865 |
|---|
| Symbol | |
|---|
| ID | 5108959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 987666 |
|---|
| End bp | 989012 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640502081 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_001186365 |
|---|
| Protein GI | 146305900 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.619374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.968432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG TAGAACGGAT CGGGCCGCAG GCCTTGCCGG CGCTGCAGGA ACAGGTCGAG
GCGATTCTCG CCGAGGCCGC GCGGCAGGGC GCCAGCGCCT GTGAAGTGGC GGTTTCCGCC
GGCCAGGGGT TGTCCACCAC GGTGCGCCAG GGCGAGGTGG AAACCGTCGA GTTCAATCGC
GACCAGGGCT TCGGCATCAC CCTCTATGTC GGCCAGCGCA AGGGTTCGGC GAGCACCTCG
GCCACCGGCG AGGCCGCCAT CCGCGAAACC GTGGCTGCCG CCCTGGCCAT CGCCAGGCAC
GCCAGCGAAG ACGAGTGTGC GGGCCTTGCC GACGCCGCGC TGATGGCCCG CGACCTGCCG
GAGCTGGATC TCTACCACCC CTGGTCGATC ACCCCGGAGC AGGCCGTGGA GCAGGCACTG
GCCTGCGAGG CGGCCGCCTT CGCTGCCGAC GCGCGGATCA AGAACGCCGA CGGCACCAGC
CTCAACACGC ACCAGGGTTG CCGCGTATAC GGCAACAGCA ACGGCTTCAT CGGTGGCTAC
GCCAGCACCC GCCACAGCCT GAGCTGCGTG ATGATCGCCG AGGGCGAAGG GCAGATGCAG
CGCGACTACT GGTACGACGT CAATCGCCAG GGCGAGCTGC TGGCCGATCC TGCGGGCATC
GGTCAGCGCG CGGCCGAGCG CGCGGTCAGC CGCCTCGGCG CACGGCCGGT CCCGACCTGC
GAGGTACCGG TGCTGTTCGC AGCCGAGCTG GCTGGCGGGC TGTTCAGCCA TCTGCTGGCA
GCCATTTCCG GCGGCAATCT GTACCGTCAC TCGTCCTTCC TCGAAGGCGC CCTCGGCCAG
TGCCTGTTCC CCGAGTGGCT GAGTCTGGAC GAGCGTCCGC ACCTGCCACG CGCGCTGGGC
AGCGCAGCCT TCGACGGCGA CGGTCTGGCC ACCTATGCCA AGCCGTTCGT GGAGAAGGGC
GAGCTGGTCT CCTACGTGCT CGGCACCTAT TCCGGGCGCA AGCTCGGCCT GCCCAGCACG
GCCAACTCCG GCGGCGTGCA CAACCTGTTC GTCACCCATG GCGATGAAAA CCAGCAGGCG
CTGCTTCGCC GCATGGGACG CGGTCTGCTG GTCACCGAGC TGATGGGGCA GGGCCTGAAC
CTTGTCACCG GCGACTATTC GCGCGGGGCT GCAGGCTTCT GGGTGGAGAA CGGCGAGATC
CAGTTCCCGG TGCAGGAGGT GACCATCGCC GGCAACCTGC GCGACATGTT CCGCCAGATC
GTTGCCGTGG GGCGCGACCT GGAACGGCGC GGCAATATCT GCACCGGGTC GGTACTGATC
GAGAAGATGA CCGTCGCCGG CAGTTGA
|
|---|
| Protein sequence | MSEVERIGPQ ALPALQEQVE AILAEAARQG ASACEVAVSA GQGLSTTVRQ GEVETVEFNR
DQGFGITLYV GQRKGSASTS ATGEAAIRET VAAALAIARH ASEDECAGLA DAALMARDLP
ELDLYHPWSI TPEQAVEQAL ACEAAAFAAD ARIKNADGTS LNTHQGCRVY GNSNGFIGGY
ASTRHSLSCV MIAEGEGQMQ RDYWYDVNRQ GELLADPAGI GQRAAERAVS RLGARPVPTC
EVPVLFAAEL AGGLFSHLLA AISGGNLYRH SSFLEGALGQ CLFPEWLSLD ERPHLPRALG
SAAFDGDGLA TYAKPFVEKG ELVSYVLGTY SGRKLGLPST ANSGGVHNLF VTHGDENQQA
LLRRMGRGLL VTELMGQGLN LVTGDYSRGA AGFWVENGEI QFPVQEVTIA GNLRDMFRQI
VAVGRDLERR GNICTGSVLI EKMTVAGS
|
|---|
| |