| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0861 |
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| Symbol | |
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| ID | 5108955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 980793 |
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| End bp | 984614 |
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| Gene Length | 3822 bp |
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| Protein Length | 1273 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640502077 |
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| Product | membrane protein-like protein |
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| Protein accession | YP_001186361 |
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| Protein GI | 146305896 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.835961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGTGGTC TGGGGCGTCT GTTCCTGCAG CTGCTGCGCT GGGGGCTCGG TCTGTGCGCC
GCGCTGCTGG TGTTGGCGGC GCTGTATGTC AGCCTGGGTC GCGAGCTGGT GCCGCTGGTG
GCCGAGTACC GCCTGGAGGC GGAGGACCAT GCCAGTGAGG CGTTGGGCGT ACCGGTGCGC
ATCGGTCGGC TGGAGGGGCG CTGGCAGGGC TTCGCGCCGG TGCTGGTGGC CCACGACGTG
CAGATCGGTG CGCAGGATCA GGGGCTCGGC CTGGATCGCG TGCAGCTGCT GCCGGATATG
CTCGGCAGCC TGCTGGCGCG GCAACCGCGC ATCGCTCATC TGCAGTTCGA TGGCCTGCAG
CTGAACCTGC AGGAAGACGC CGAGGGTGCC TGGCACCTGC AGGGCTGGCC AGAGCGTGAC
GGCCCCGACG CGGATGTCCA GCAGGTGCTG GAACAGTTGC GGATAGTGCG GCGCATCAGC
CTGTTCGACA GCCGTATCGT CCTGCAGCCG CGCGACCAGG AGCCGCTGCT GCTCAGCTAC
GTCAACCTCA GCCTGGGCTA TGGCCGCAAC AGCCAGCGCC TGGATGGCCG CCTGCTGCTG
CCCGATGGTC AGCCGCTGGC CTTGCGCCTG CGCACGCGGA TGCAGCCGCA GAGCTGGCGC
GAGGCCGAAG CCGAGCTGTA CCTGAGCCTG CCGCAGAGCG ACTGGGCGGC CTGGCTGCCG
CAGCGCCTGA CCGGCGACTG GCACCTTGAA CGCCTGCAGG CCGGCGGCGA ACTCTGGCTC
AAGGCGCGCG GGCTGGCCCT GCAGCAGGGT GCCCTGCGCC TGCACGCACC GCAGGTGGTC
GGCGCGCATG GCGAGCAGGA GCCGATCACG CTGGACGACC TGGCCTTCAA TGCCTACTTC
CGTCAGGAGG CAGGCGGCGT GCACGCGCAG CTCGATTCCC TGGCCATGAC CCATGGCGAG
CAGCGCATTG GCGAAGTGCA TCTGAACCTG GCGCAGCACG GCGCCGGCAG CGCGGAAGAG
CGCTGGGCGC TGAGCGCCGA CCGCCTCGAT CTGGCGGCTT GGGCGCCCCT GGTGCACGCC
CTGGTGCCCA TGCCGGAGGC CGCCGAGCAG GCGCTGGTCG GCCTGGCGCC GCAGGGCAGC
GTCAGCAATC TGCTGCTGGA CTACTTCCCG CAAGCAGAAG GCGCCGAGCG TCTGCGCTTC
GCCGCCAACC TCGAGCGCGT GGGCATCGCC GCCTACCACG GCGCGCCGGC GGCAGAGAAC
GTCAGCGGCA GTGCGTCGGG CAATCTGTTC CAGGGCGAGT TGCGCCTGAA CAGCGAGAAC
TTCGCCCTGC ATCTGGATCA GCTGTTCCCC GAGCCCTGGC GCTACCGTCA TGCCCAGGCG
CGCCTGAGCT GGGCGTGGAA TGACGACGGC CTGACCCTGG CCAGCCCCTA CATGCGCCTG
GATGGCGAGG AAGGGCAGAT CGCCGGAGAC ATGCTGATTC GCCTGCGTCG CGATCCCGAT
GCCGAGGACT ACATGGACCT GCGCGTCGGC CTGCGTGACG GCGATGCGGC CTACACCGAG
AAGTACCTGC CGAGCCGTTC ACCGGGCATG AGCGCCGAGC TGGACAAGTG GCTGAAGACT
GCCATTCGCT CTGGCCGGGT CGAGGAAGGC TATTTCCAGT ATCAGGGATC GCTGAACAAG
GGCGCTTCGC TGGGGGCGCG CAGCCTCAGC CTGTTCTTCC AGGTCAAGGA TGCCGAACTG
GCCTTCCAGC CGGACTGGCC GTCGCTGCGC GAAGGCAACG GCGAGGTGCT GATCGAGGAC
GACGCGGTAC GCGTGCGCCT GCAGAGCGGG CGTCTGCTGG ACAGCCGGGT CAGCGAGGTG
ACCGCCAACA TTCCCCTGCT GCATGACGGC AAGCCGCCGC GCCTGAAGCT CGACGGCAAG
GTGCAGAGCA GCCTGGGCGA TGCCATCAAG CTGCTGCGCG AAGCCCCCAT CGGCACCGCC
GAGATCGTTG CCGGCTGGCA GGGTGAAGGG CCATTGAGCG GACGCCTGCA GCTGGATGTC
CCTTTGCAGA AAGGGCCGAA GCCGGGCGTG ATAGTGGACT TCGCCACCGA GGGCGCCAGC
CTCAAGCTGA GCAACCCGGA TCTGCAATTG AGCCAGGTGC AGGGCGCGTT TCGCTTCGAC
AGCGCATCGG GGCTCAGTGC TCCGGACGTG CGGGCGCAGG TGTTCGGGCG TCAGGTGCGC
GGCAAGATCA GCGCCGAAGG CTCGCGCGGC CAGGCGCGCA CGCTCTTCGA TCTGCGCGGC
CAGGTGCAGG TGGAAACGCT CAGTCAGTGG CTGGGTGGTC CGCAGAAGCT TCCGGTTGGC
GGGCTGCTGC CCTATCGCCT GCGGCTGACC CTCGACGGAG ACGACAGTCA GCTGCGTGTC
GACTCGAATC TGCGCGGCGT GGCCATCGAT CTGCCCGCGC CCTTCGGCAA GACGGCCGAG
CAGGAGCGCC ATGCCGAGTG GCGCATGACC CTGAGCGGAC GCGAGCGGCG CTACTGGGCC
GACTACGAGG GGGTGGCCAG TCTCAATCTG GCGGCGCCGG CAGGGGCTCT GGCCGACGGG
CGCGGTGAAC TGGTAGTGGG CGGCGAGCCG GCTCGGCTGC CCACTGCGCA GGGGCTGAGG
GTGCGTGGCA CGCTGGCGGA GCTGGACCTC GAGGCCTGGA AGCAGCTGTC CGTGGATCAC
CCGGTCAAGG TGGACGACGA CAGCCAGCGT CTGTTCCGTG GGGGGCAGCT GAATATCGGG
CGTTTCCGCG GGTTTGGTCA GGAGGTCGAG CAGCTGCGCA TCGGCCTGAC GCGACAGGGG
CAGGCCTGGG AACTGCAGCT CAACAGCGAG CTGGCGGCCG GGCGGGTGCT GCGCGCCGAT
GCCGAGGGTG TGCCTATCCG CATCGATCTG CAGCATGTCA GGCTGCCGGC ACCTGATCCT
GAGGCTGCGA AGGCCAGCGA TGCGCCCGAT CCGCTGGCGG ACGTCGACCC CCGGCAGATT
CCGGCGCTGG ACATCCGTAT CGAGCGCGTG CAGCGCGGCG ACAAGGTGCT GGGTGCCTGG
TCGCTGAAGG TGCGCCCGGA AGAACAGGGG GTGCGCTTCG ACGAACTCGA TCTCGACCTG
CAGGGGCTGA AGATCGGCGG CAGCGCAGGC TGGCGCGGCG CGCCGGGCGC CACGCGCAGC
TGGTACAAGG GACGCATGCA GGGCGGGGAC CTGGGCAAGG TACTGCTGGC CTGGGACTTC
GCCCCCAGCG CCACCAGCGA AAGTTTTCGT GTCGACATCG ACGGCAGCTG GCCGGGCTCG
CTGGCCTGGT TCTCGCTCAA GCGTTTTTCC GGCACCTTCG AACCCTCCCT GCGCAAGGGA
CAGTTCGTCG AAGTGCAGGG CTCGGCGCAG GCATTGCGGG TATTCGGCCT GCTCAACTTC
GACTCCATCG GTCGCCGCCT GCGCCTGGAC TTCTCGGACC TGCTCGGCAA GGGCCTGAGC
TATGACCGGG TCAAGGGCAA CCTGCAGGCC AACGACGGTC TGTTCGTTAC CCGCGAACCG
ATCACCCTGA CCGGGCCGTC GAGCAACCTC GAACTCAAGG GCAACCTGGA CATGCGCAAC
GAGCGTATCG ACGCCAAGCT GCTGGTGACC CTGCCGGTGA CCAATAACCT GCCGCTGGCC
GCGCTGATCG TCGGGGCGCC GGCCGTCGGC GGTGCGCTGT TCGTGGTCGA CAAGCTGCTG
GGAGACAGGG TCGCGCGCTT CGCCAGCGTG CAGTACGACG TCAAGGGGCC ACTGCAGGAT
CCGGAAATCA GCTTCGACAA GCCGTTCGAA AAACCGCAAT GA
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| Protein sequence | MGGLGRLFLQ LLRWGLGLCA ALLVLAALYV SLGRELVPLV AEYRLEAEDH ASEALGVPVR
IGRLEGRWQG FAPVLVAHDV QIGAQDQGLG LDRVQLLPDM LGSLLARQPR IAHLQFDGLQ
LNLQEDAEGA WHLQGWPERD GPDADVQQVL EQLRIVRRIS LFDSRIVLQP RDQEPLLLSY
VNLSLGYGRN SQRLDGRLLL PDGQPLALRL RTRMQPQSWR EAEAELYLSL PQSDWAAWLP
QRLTGDWHLE RLQAGGELWL KARGLALQQG ALRLHAPQVV GAHGEQEPIT LDDLAFNAYF
RQEAGGVHAQ LDSLAMTHGE QRIGEVHLNL AQHGAGSAEE RWALSADRLD LAAWAPLVHA
LVPMPEAAEQ ALVGLAPQGS VSNLLLDYFP QAEGAERLRF AANLERVGIA AYHGAPAAEN
VSGSASGNLF QGELRLNSEN FALHLDQLFP EPWRYRHAQA RLSWAWNDDG LTLASPYMRL
DGEEGQIAGD MLIRLRRDPD AEDYMDLRVG LRDGDAAYTE KYLPSRSPGM SAELDKWLKT
AIRSGRVEEG YFQYQGSLNK GASLGARSLS LFFQVKDAEL AFQPDWPSLR EGNGEVLIED
DAVRVRLQSG RLLDSRVSEV TANIPLLHDG KPPRLKLDGK VQSSLGDAIK LLREAPIGTA
EIVAGWQGEG PLSGRLQLDV PLQKGPKPGV IVDFATEGAS LKLSNPDLQL SQVQGAFRFD
SASGLSAPDV RAQVFGRQVR GKISAEGSRG QARTLFDLRG QVQVETLSQW LGGPQKLPVG
GLLPYRLRLT LDGDDSQLRV DSNLRGVAID LPAPFGKTAE QERHAEWRMT LSGRERRYWA
DYEGVASLNL AAPAGALADG RGELVVGGEP ARLPTAQGLR VRGTLAELDL EAWKQLSVDH
PVKVDDDSQR LFRGGQLNIG RFRGFGQEVE QLRIGLTRQG QAWELQLNSE LAAGRVLRAD
AEGVPIRIDL QHVRLPAPDP EAAKASDAPD PLADVDPRQI PALDIRIERV QRGDKVLGAW
SLKVRPEEQG VRFDELDLDL QGLKIGGSAG WRGAPGATRS WYKGRMQGGD LGKVLLAWDF
APSATSESFR VDIDGSWPGS LAWFSLKRFS GTFEPSLRKG QFVEVQGSAQ ALRVFGLLNF
DSIGRRLRLD FSDLLGKGLS YDRVKGNLQA NDGLFVTREP ITLTGPSSNL ELKGNLDMRN
ERIDAKLLVT LPVTNNLPLA ALIVGAPAVG GALFVVDKLL GDRVARFASV QYDVKGPLQD
PEISFDKPFE KPQ
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