Gene Pmen_0838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0838 
Symbol 
ID5108932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp955972 
End bp956946 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content68% 
IMG OID640502054 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001186338 
Protein GI146305873 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGC TGGATATCCG CAACCTCTCG GTGCGCTTCG GCGCTGCCGA CGCCGTGCCG 
GTGGTCGACG GTCTCGACCT GCGCGTGGAC AAGGGTGAGG TGCTGGCCAT CGTCGGCGAG
TCCGGCTCCG GCAAGTCGGT GACCATGATG GCGCTGATGG GCCTGATCGA TGCGCCCGGC
ATCGTACAGG CCGACTGCCT GCAGTTCGAC GGCACCGACA TGCTGCGCCT GAAGGGCCGC
CAGCGTCGGC ATATCGTCGG CAAGGACCTG GCCATGGTGT TCCAGGATCC GATGACCGCC
CTCAACCCCA GCTACACCGT GGGCTTCCAG ATCGAGGAAG TGCTGCGCCA GCACCTCGGT
CTGAAAGGCA AGGCGGCGCG GGCCCGTGCC CTGCAGCTGC TGGAAAGGGT GGAGATCCCC
GGCGCCGCCA GCCGCCTCGA TGCCTACCCG CACCAGCTTT CCGGCGGCAT GAGCCAGCGC
GTGGCAATCG CCATGGCGAT CGCCGCCGAA CCCAAGCTGC TGATCGCCGA CGAACCCACC
ACCGCGCTGG ACGTGACCAT CCAGGCGCAG ATCATGGAGC TGCTGCTGAA TCTGCAGCGC
GATGAAGGCA TGGCCCTGGT GCTGATCACC CACGACCTGG CGGTGGTCGC CGAAACCGCT
CAGCGCGTCT GCGTGATGTA TGCAGGACAG GCGGTGGAAC TGGGCCGGGT GCCGACCCTG
TTCGACGCGC CCAGCCACCC CTACACCGAG GCACTGCTCA AGGCCATTCC CGAACACAGT
GCCGGCGCCC ATCGTCTGGC CACGCTGCCG GGCATCGTTC CCGGTCGCTA CGACCGTCCG
CAGGGCTGCC TGCTGTCGCC ACGCTGCCCC TACGTGCAGG AGCGCTGCCG CCAGCAACGC
CCGACGCTGG ACGCACACGA GCGAGGCGCC GCGCGCTGCT TCTTCCCTCT GGTACCCACG
GCGGAGGTGG CCTGA
 
Protein sequence
MSLLDIRNLS VRFGAADAVP VVDGLDLRVD KGEVLAIVGE SGSGKSVTMM ALMGLIDAPG 
IVQADCLQFD GTDMLRLKGR QRRHIVGKDL AMVFQDPMTA LNPSYTVGFQ IEEVLRQHLG
LKGKAARARA LQLLERVEIP GAASRLDAYP HQLSGGMSQR VAIAMAIAAE PKLLIADEPT
TALDVTIQAQ IMELLLNLQR DEGMALVLIT HDLAVVAETA QRVCVMYAGQ AVELGRVPTL
FDAPSHPYTE ALLKAIPEHS AGAHRLATLP GIVPGRYDRP QGCLLSPRCP YVQERCRQQR
PTLDAHERGA ARCFFPLVPT AEVA