| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0826 |
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| Symbol | |
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| ID | 5108920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 939271 |
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| End bp | 942408 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502042 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001186326 |
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| Protein GI | 146305861 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCGC GCTTCTTCAT CGATCGCCCG GTATTCGCCA CCGTCATTTC CATCGTCATC
GTGCTGGCGG GCCTGGCCGC CATGCGCGCG CTGCCCATCG CCCAGTACCC GGAAATCCTG
CCGCCTCAGG TCTCGGTTTC GGCCGCCTAT CCCGGCGCCA GTTCGCAGGT GATCGCCGAG
ACCGTGGCGG CGCCGCTGGA GCAGGCGATC AACGGCGTCG AGGACATGAT CTACCAGCTG
TCCAACTCGT CCAGCAGCGG GGCGATGAGC CTGACGGTGT ATTTCGAGGT GGGTACCGAC
CCCGATCAGG CCACCATCAA CGTCAACAAC AAGGTGCAGG CGGCGCTGGC CAAGCTGCCC
GAGGAAGTGC GCCGCCAGGG CGTGAAGGTG GAGAAGAAGT CCTCCGACAT TCTCCAGGTG
ATCACCCTCT ACTCGCCGGA TGACTCGCGT GACCCGATCT TCATCAGCAA CTACGCGCTG
ATCAACGTCA TCGACGAGCT CAAGCGCCTG CCCGGCGTGG GCGATGCCAG CCAGTTCGGC
TCCAAGGACT ATTCCATGCG CATCTGGCTG CGCCCGGACA AGCTGGCGCA GTACAACCTC
ACGCCTACCG ATGTGGTGAA CGCCATCCGC GAGCAGAACT CGCAGTTCGC CGCCGGCAGC
TTCGGCCAGC AGCCGCTCAA GGAGCCGCAG GACTTCACCT ACACGGTCAC CACCCAGGGC
CGCTTCACCG ATCCCAAGGA GTTCGAGAAC GTCATCCTGC GCACCGATGC CACCGGCGCC
AGTCTGCTGC TCAAGGACGT GGCCCGGGTC GAGCTGGGGG CGCAGGACTA CTCGCTGGTC
ACCACCCTGA ACGGCCAGCA GAACGCCGCC TTCGGCATCT ACCTGCAGCC CGGCGCCAAT
GCTCTGGACA CCGCCGAAGC GGTGCAGCGC ACCATGGAGC GCCTGAGCAA GCGCTTTCCC
GAAGGCATCG CCTACAAGAT TCCCTACGAC ACCACCAAGT TCGTCCAGGT CTCCATCGAG
GAGGTGATCC ACACCTTCTT CGAGGCGCTG GTGCTGGTGG TGCTGGTGGT GTTCATCTTC
CTGCAGAACT GGCGCGCCAC GCTGATTCCG GTACTGGCCA TTCCGGTGTC GCTGGTCGGC
ACCTTCGCCG GTATGTACAT GCTGGGTTTT TCCATCAACC TGCTGACCCT GTTCGGCATG
GTGCTGGCCA TCGGCATCGT GGTGGACGAC GCCATCGTGG TGATCGAAAA CGTCGAGCGG
GTGATGCGCA CCCAGGGGCT CGGCCCGCGT GAGGCGTCGA TCAAGGCGAT GGAGGAGGTC
ACCGGGCCGA TCATCGCCAT CGTCCTGGTG CTCTGCGCGG TGTTCGTGCC GGTGGGGTTC
CTCGGTGGCC TGGCCGGGCA GATGTACAAG CAGTTCGCGA TCACCATCGC GGTGTCGGTG
GTGATTTCCG GGATCGTCGC CCTGACCCTT TCGCCCGCAC TCTGCGCCCT GTTGCTCAAG
CCCGGCCACC ATGAGCCGGC GGCGCCCTTC CGCGCCTTCA ACCGCTTCTT CGACAAGGCC
ACCGAGGGCT ACGGCGCCGG GGTGCGCTTC TTCCTCAAGC GCTCGCTGGT CGGCCTGCTG
CTGTTCGGCG GCATGATCGC GCTGATCATG CTGCTGTTCG CACGGGTGCC CGGCTCGCTG
GTGCCCGACG AGGATCAGGG CTACGTGATC AACGCCTACT ACCTGCCGCC GGCCGCCTCG
CTCAATCGCA CCGAGGCGCT GAGCAGTGCG GTGAGCCAGC AGTTGATGGA GCACCCGGCG
GTGGAGGATG TGGTGACCTT CGCCGGTTTC GACGTGCTCA CCTTCGGCGT GCGCAGCAAC
GCCGGGGTGT CCTTCGTGCC GCTCAAGGAC TGGAGCGAGC GGCGCACGCC TGAGCTCGAT
GCGCGGAACC TGACCCACGA GTTCATGGGC ATGGGCGCCG CGCAGAAGGA CGGCCTGGTG
CTGTCGTTCA ACCCGCCGCC GATCACCGGC ATGAGCACCA CCGGCGGCTT CGAGTCCTAC
ATTCAGGATC GTTCCGGTGG TAGCGTCGAG CAGCTCGGCG AGAAGGTGCA GGCCTTCGTC
CAGGCTGCCA GCCAGCGTCC CGAACTGGCC GGCGTACAGA GCACCTTCAG CGCCAACGTG
CCGCAGTACT ACATCGACCT GGATCGCACC AAGACCCGCG CGCTCGGCGT GAGCGTCAGC
GACGTGTTCA CCGCCATGCA GGCCACCTTC GGCAGCTACT ACGTCAACGA CTTCACCCTC
TTCGGGCGTA CCTGGCAGGT CAGCCTGCAG TCCGAATCGG AGTTCCGCCG CAAACCGGAG
GATCTGGGCC AGGTCTACGT CCGTTCCAGC ACCGGCGATC TGGTGCCGCT GTCGACCCTG
CTGCGGGTGC GGCGCATCCT CGGGCCGGAT TCCTATGACC GTTTCAACGT CTATCCCTCG
GCCAAGGTGC TCGGCGGCCC GGCGCCAGGT TACAGCTCGG GGCAGGCGCT GGCGGCCATG
CAGGCGGTGG CCGACGAAGT GCTCGGCGAG GACTACAGCC TGGGCTGGAT CGGCTCGGCC
TATCAGGAAC TGGCGACTCA GGGCTCGGGC GCCCAGGCCT TCGTCTTCGG CCTGATCCTG
GTGTTCCTGA TCCTGGCGGC GCAGTACGAG CGCTGGACGC TGCCGCTGGC GGTGGTCACT
GCGGTGCCCT TCGCGGTGTT CGGGGCTATT CTTGCGGTGT GGCTGCGCGG CATCCAGAAC
GACGTGTACT TCCAGGTCGG CCTGGTCACC CTGATCGGTC TGGCGGCGAA GAACGCCATC
CTCATCGTCG AGTTCGCCGT GCTGCTGCGC GCCGAAGGCA AGGGTATCTT CGACTCGGCG
CTGGAGGCGG CCAAGCTGCG TTTCCGCCCC ATCGTCATGA CCTCGCTGGC GTTCATCCTC
GGTTGCGTGC CGCTGGCGAT CAGCTCCGGG GCCGGCTCGG CCAGCCGCCA CTCCATCGGC
ACCGGGGTGA TCGGCGGCAT GCTCGCGGCC ACGCTGCTGG CCACCTTCCT CATTCCCATG
TTCTACCTGC TGGTGGAGAC CGGGGCACAG CGCCTGAGTC GTCGCGGCAA GGCGCAGGTG
GGAGACGAGG CGCATTGA
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| Protein sequence | MISRFFIDRP VFATVISIVI VLAGLAAMRA LPIAQYPEIL PPQVSVSAAY PGASSQVIAE
TVAAPLEQAI NGVEDMIYQL SNSSSSGAMS LTVYFEVGTD PDQATINVNN KVQAALAKLP
EEVRRQGVKV EKKSSDILQV ITLYSPDDSR DPIFISNYAL INVIDELKRL PGVGDASQFG
SKDYSMRIWL RPDKLAQYNL TPTDVVNAIR EQNSQFAAGS FGQQPLKEPQ DFTYTVTTQG
RFTDPKEFEN VILRTDATGA SLLLKDVARV ELGAQDYSLV TTLNGQQNAA FGIYLQPGAN
ALDTAEAVQR TMERLSKRFP EGIAYKIPYD TTKFVQVSIE EVIHTFFEAL VLVVLVVFIF
LQNWRATLIP VLAIPVSLVG TFAGMYMLGF SINLLTLFGM VLAIGIVVDD AIVVIENVER
VMRTQGLGPR EASIKAMEEV TGPIIAIVLV LCAVFVPVGF LGGLAGQMYK QFAITIAVSV
VISGIVALTL SPALCALLLK PGHHEPAAPF RAFNRFFDKA TEGYGAGVRF FLKRSLVGLL
LFGGMIALIM LLFARVPGSL VPDEDQGYVI NAYYLPPAAS LNRTEALSSA VSQQLMEHPA
VEDVVTFAGF DVLTFGVRSN AGVSFVPLKD WSERRTPELD ARNLTHEFMG MGAAQKDGLV
LSFNPPPITG MSTTGGFESY IQDRSGGSVE QLGEKVQAFV QAASQRPELA GVQSTFSANV
PQYYIDLDRT KTRALGVSVS DVFTAMQATF GSYYVNDFTL FGRTWQVSLQ SESEFRRKPE
DLGQVYVRSS TGDLVPLSTL LRVRRILGPD SYDRFNVYPS AKVLGGPAPG YSSGQALAAM
QAVADEVLGE DYSLGWIGSA YQELATQGSG AQAFVFGLIL VFLILAAQYE RWTLPLAVVT
AVPFAVFGAI LAVWLRGIQN DVYFQVGLVT LIGLAAKNAI LIVEFAVLLR AEGKGIFDSA
LEAAKLRFRP IVMTSLAFIL GCVPLAISSG AGSASRHSIG TGVIGGMLAA TLLATFLIPM
FYLLVETGAQ RLSRRGKAQV GDEAH
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