| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0824 |
|---|
| Symbol | |
|---|
| ID | 5108918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 937355 |
|---|
| End bp | 937975 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502040 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001186324 |
|---|
| Protein GI | 146305859 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGAA CCAAAGAAGA TGCGGAGAAA ACCCGCTGCG CCATCCTCGC CGCAGCGGAG
CAGTTGTTTC TCGAACAGGG GGTGGCCCAT ACCAGCCTGG AGCAGCTGGC ACGACGCGCC
GGCGTGACGC GCGGCGCCAT CTACTGGCAC TTTCAGAACA AGGCGCACCT GTTTCACGAA
ATGCTCAACC AGGTGCGCCT GCCGCTGGAG CCGCTGGCCG AACAGCTGGA GGCGGCCGAC
AGCCTCGTCT CCCTGCAGAT GTTGCGCGAT CTGTGCGTCG AGGCCATGGC CAACCTGGTG
CAGGACGAGC AACGCCGGCG CATCTTCACC ATCCTGTTGC GGCGCTGCGA GTTCACCGAA
GAGCTGCGGG AAGCCGAGGA GCGTCACGAA GCCTTCATCA ATCAGTTCAT CGACCTGTGC
GAGCGCCAGT TCGCCCAGGA GGCGGTGCAG CCCCTGCTGC AGCCGGGCAT CACCCCTCGC
CTGGCGGCGC GCACCCTGCA TGCGCTGATC GTCGGCCTGT TCAGCGACTG GCTGCGCGAC
CCCAATCTGT TCGATCCGCA GCTCGACACC CCGGCAATGG TCGACAGCTG CTTCAGGGGG
CTGCTCACCG CCTGGACATA G
|
|---|
| Protein sequence | MRRTKEDAEK TRCAILAAAE QLFLEQGVAH TSLEQLARRA GVTRGAIYWH FQNKAHLFHE
MLNQVRLPLE PLAEQLEAAD SLVSLQMLRD LCVEAMANLV QDEQRRRIFT ILLRRCEFTE
ELREAEERHE AFINQFIDLC ERQFAQEAVQ PLLQPGITPR LAARTLHALI VGLFSDWLRD
PNLFDPQLDT PAMVDSCFRG LLTAWT
|
|---|
| |