Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0820 |
Symbol | |
ID | 5108914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 931925 |
End bp | 934009 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502036 |
Product | Rhs element Vgr protein |
Protein accession | YP_001186320 |
Protein GI | 146305855 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.476122 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGGATG CCAACCAGGC GCATATCACC CTCGCCATTC CCGCCGTCGA CAACGACCTG CAGGTACTGA GCTTCGAGGG GCGCGAAGCG CTCAACAAGC CCTACCGTTT CGATATCGAG CTGGTCAGCC AGCGCGCCGA TCTCGACCTC GACGCGCTGA TCAACCAGAC CGCCTATCTG GCCTTCGGCC CCTCCGGCAA GGGCGTGCAT GGCGTGCTCT ACGCCATCGA ACAGGGCGAC TCGGGCAAGC GCCTGACGCG CTACCGCATC AGCCTGCGGC CGCAGCTCGC CTATCTGGCT CATCGCCACA ACCAGCGCAT CTTCCAGCAC CTCACCGTGC CGCAGATCAT CGGCCAGATC CTCGAAGAGC ACGGCATCCA GAGCGACGCC TATCAGTTCC AGCTCGGTTA CCTCTACCCT GAACGCGACT ACTGCGTGCA GTACGACGAG AGTGACCTGC ACTTCATCCA GCGCCTGTGC GAGGAAGAAG GCATCAGCTT CCACTTCCAG CACAGCGAAG ACAGCCACCG CCTGGTGTTC GGCGACGACG CCAGCGTCTT CCCCAAGCTC GATCCGCTGA ATTACCAGCA AGGCAGCGGC CTGGCCGCCG ATCACGAAGT GGTACGCGCC TTCGGCGTGC GCCTGGAAAC CCGAAGCACC CATGCCACCT GGCGCGACTA CGACTTCGAG CAGCCCAAAC TGAGGATGGA AGCGGACTAC CGCAGCGAGT TCAGCCCGGC GCTGGAAGTC TACGACTACC CTGGTCGCTT CACCGACCGC ACGCGCGGCA AGCACCTGGC CAAACGGAGC CTGGAGCGCC TGCGCAGCGA CTACGAACTG GCCGAAGGCA AGAGCGATGC GTACCTGATC AGCGGCCACT TCCTCGCCCT GGCCGGCCAC CCGCGCCAGC AGTGGAACGA TCTGTGGCTA CTCGATGAAG TGATTCACGA AGGCAAGCAG CCGCAGGTGC TGGAGGAGTC GGTCACCAGC AACACCCAGC CTGGCGATGG CTTCCAGCAG GGCTACCGCA ACCGCTTCAC CGCCACGCCC TGGGACATCC CCTACCGCCC GGCGCTCGAA CATCGCAAAC CCAAGGTACT GGGTAGCCAG ACGGCCGTGG TCACCGGCCC GGCTGGCGAG GAAATCCACT GCGACCAGTA CGGCCGAGTG AAGGTGCAGT TCCATTGGGA CCGCGAAGGC CTGGGCAACG ACACCACCAG TTGCTGGCTG CGCGTGGCCT CCAACTGGGC CGGCAAGGCC TACGGCGGCA TCGCCATTCC CCGGGTGGGC ATGGAGGTGC TGGTCACCTT CCTCGAAGGC GACCCCGACC AGCCGCTGAT CACCGGCTGC CTGTACCACA CCGAGCACGT CGTGCCTTAC GACCTGCCGG CGAACAAGAC CCGCAGCGTC TTCAAGACCC TGAGCAGCCC GGGTGGTGGC GGCTACAACG AATTTCGCAT CGAAGACCGC AAGGGCGCCG AGCAGATCTA CATCCACGCC CAGCGCGACT GGGACGAGAA CATCGAAAAC AACCAGAAGA TCCGCGTCGG CAACGAGCGC CACGATACGG TCGAAGCCAA CAGCTACACC GAGCTTCAGG CCGAAGAACA CCGCACCACC GACCTCGACC GCAAAGTGGA AGTGCGAGCC AACGACCACC TCACCGTCGC CGTCACCCAG CACAACAAGA TCGGTACCGG CCAGTTCATC GAAGCCGGCA ACGAGATTCA CTACAACGCC GGCAGCAAGG TGGTGATCGA CGCTGGCATG GAGCTCACCG CCGCAGGTGG CGGCAGCTTC CTCAAGCTCG ACCCGAGTGG CGTGACGCTG AGTGGGGCGA CGATCAAGAT GAATTCGGGG GGCGGGCCGG GTAGTGGGTC GGGGTTGAAA ATACTGGGGC CGTTGATTCC GTGGGCGGCG GATGCGGATA AGGCCGGGCA GAAACCCGAG CTGGCATTGG CAAACGCCCA GTTGCAGCTT GCCGTCAAGG CTCGCCAACT GGCTGCAAGC CGCTGCCCCA TCTGTGAGGC TTGCCGTGAA GGGCTGTGCG ATCTGCCGAC TCGGGCCGGA GGGGCTCAAG GATGA
|
Protein sequence | MLDANQAHIT LAIPAVDNDL QVLSFEGREA LNKPYRFDIE LVSQRADLDL DALINQTAYL AFGPSGKGVH GVLYAIEQGD SGKRLTRYRI SLRPQLAYLA HRHNQRIFQH LTVPQIIGQI LEEHGIQSDA YQFQLGYLYP ERDYCVQYDE SDLHFIQRLC EEEGISFHFQ HSEDSHRLVF GDDASVFPKL DPLNYQQGSG LAADHEVVRA FGVRLETRST HATWRDYDFE QPKLRMEADY RSEFSPALEV YDYPGRFTDR TRGKHLAKRS LERLRSDYEL AEGKSDAYLI SGHFLALAGH PRQQWNDLWL LDEVIHEGKQ PQVLEESVTS NTQPGDGFQQ GYRNRFTATP WDIPYRPALE HRKPKVLGSQ TAVVTGPAGE EIHCDQYGRV KVQFHWDREG LGNDTTSCWL RVASNWAGKA YGGIAIPRVG MEVLVTFLEG DPDQPLITGC LYHTEHVVPY DLPANKTRSV FKTLSSPGGG GYNEFRIEDR KGAEQIYIHA QRDWDENIEN NQKIRVGNER HDTVEANSYT ELQAEEHRTT DLDRKVEVRA NDHLTVAVTQ HNKIGTGQFI EAGNEIHYNA GSKVVIDAGM ELTAAGGGSF LKLDPSGVTL SGATIKMNSG GGPGSGSGLK ILGPLIPWAA DADKAGQKPE LALANAQLQL AVKARQLAAS RCPICEACRE GLCDLPTRAG GAQG
|
| |