Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0806 |
Symbol | |
ID | 5108900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 918534 |
End bp | 920765 |
Gene Length | 2232 bp |
Protein Length | 743 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502022 |
Product | TonB-dependent receptor |
Protein accession | YP_001186306 |
Protein GI | 146305841 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCCC TCAATTCCCG TACCGCCCTG GCTAGCGCCG TTGCGCTGGC CGCCAGCTTC GGCGCCCAGG CCAACGAGCC GATCGCCCTG GGCGACGTGG TCGTCAGCGC TTCCGGCTTC GAACAGAAGA TCACCGAAGC CCCCGCCAGC ATCAGCGTGA TCAGGCGCGA GGAGTTGCAG CAGAAGCGCT ACAGCAACCT GGCGCAGGCT CTGGGTGATG TTGAGGGCAT CGATATCGGC CAGGGCACCG GCAAGACTGG CGGGCTGAAC ATCAGCATTC GCGGCATGCC CAGCGACTAC ACCCTGATCC TCATCGACGG TCGGCGCCAG AACACCGCGG GCAACGTCAC GCCCAACGGC TTCAACGAAA CCGCCACCAG CTTCATGCCG CCGATGTCCG CCATCGAACG CATCGAGGTG ATTCGTGGGC CGATGTCGAC CCTGTATGGC TCTGACGCCA TGGGCGGCGT GGTCAACATC ATCACCCGCA AGGTGGCCAA GGAATGGGGA GCCAGCCTGA GCCTGGACCA CACCTTCCAG GAGAACCGCG ACTATGGCGC CACCAGCAGC ACCAGCCTCT ATGCCAGCGG CCCGCTGGTC GAAGGCCTGC TGGGCCTGGC TGTGCGCGGC AGCTTTTATG ACCGCGACGA GTCGGAGCTG CAGTTCGACA ACGACAGTAC CGTCAGCAAG CGTGGCGCGT CGCCGGTCGA GGGCCGCAAC GCGACCTTCG GCAGCCGCCT GACGCTGACC CCGAACGAAA GCCACGACTT CTCGCTGGAT TTCGAGCGCG GCCGTCAGGT CTACAACAAC GACGACTGCC AGCTGGGCAA TCTCGATGGC AAGAACGGCG GCAGTGCGAC CGACGGCTGC ACCACCAATG CCCCCCTGCG TGCCAATGGC TACAAGGATG AACTGCGCTT CCAGCGCGAT CAGTTCGCCC TCAGCCATAC CGGACGTTTC AGCTTCGGTA CGCTGGAAAG CAGCGTCACC CACAACACCA CGGAAACCTT CGGCCGCACC ATTCCCGGCA ACCCGATCGG CAACTCCTAC ACCGGTTTCC CCTCGATCAT CATCGGCGAC GACCGCGAGC TGAAGTCGAC CGATCTGGTC GTCGACACCA AACTGGTCGC TCCAGTGGGC GAATCGCACA TCACCACCGT CGGCGCTCAG TGGTGGGACG CCAAGGTCAC CGACGGCATC GCCGACGAAG ATTTCCAGCA GACTTCCTGG GCGCTGTTCG CCGAAGACGA GTGGCGTCTG CGCGACAACC TGGCGCTGAC CCTGGGCGCC CGCTACGAAG ATCATGAAGC CTTCGGCGGC CACATCAGCC CGCGCGCCTA TCTGGTCTGG AACACCACTG ACGCCTGGAC ACTCAAGGGC GGCGTCAGCC GTGGCTACAA GACTCCGACA CTCAATCAGC TGCACGACGG CATCAACGGT GTCACCGGCC AGGGCTCGAC CATCACCATC GGCAGTCCGG ACCTCGACCC GGAGATCACC ACCAACACCG AAATCGGCGC GTACTACGAC AACCTCGCCA ACTTCAATGC CAACGTCACC CTGTTCCACA ACAAGTTCAA GGACAAGATC GACGACGGCA CACCGCTGGC GAACTGTTTC TACACGGCGA ACCCGAACCA GCCAGGCTGC GTGAGCTATG GCCCGGGCTT CACTCAGGAG AACTTCGCCC AGAGCGTGAA CATCGGCGAG GCCGTGACCA AGGGCGTGGA AGTAGCGGGT CGCTGGCAGT TCGCACCGGC CTGGGCGCTG GCCCTCAACT ACACCTACAC CGACAGCGAG CAGAAGAGCG GCATCAACAA AGGCGCGCCC CTCACCAATA CGCCGGAGCA CATGGCCCAT GCGCGCCTGA GCTGGGCTGC CAATGACCGC CTGACCCTGT GGTTCAAGGG GGAGTATCGC GGTGAGCGCG CCCGCTTCAC CGATCGTTAC GACAACCTGA CCGCCGCGAA CAAGGCCCTT TACGATGCAG TCGGTGATCT GAAGGCTTAT GAAGTCTTCC ACCTCGGGGG TTCGTTCAAG GCGACCGAAA ACCTGACCTT CAGCGCCACG ATCTACAACC TGTTCGACAA GGACTTCACC AGCGGCAGCT ACTACACCAC CAACACCGGT TCCACCGCAT GGGCGTCCGA CTACACGCAG ATCGGCCAGT CGACCACCGG CACTCTGGAA GAAGGGCGCC GCCTCTGGCT GTCCACCGTC ATCGAGTTCT GA
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Protein sequence | MSALNSRTAL ASAVALAASF GAQANEPIAL GDVVVSASGF EQKITEAPAS ISVIRREELQ QKRYSNLAQA LGDVEGIDIG QGTGKTGGLN ISIRGMPSDY TLILIDGRRQ NTAGNVTPNG FNETATSFMP PMSAIERIEV IRGPMSTLYG SDAMGGVVNI ITRKVAKEWG ASLSLDHTFQ ENRDYGATSS TSLYASGPLV EGLLGLAVRG SFYDRDESEL QFDNDSTVSK RGASPVEGRN ATFGSRLTLT PNESHDFSLD FERGRQVYNN DDCQLGNLDG KNGGSATDGC TTNAPLRANG YKDELRFQRD QFALSHTGRF SFGTLESSVT HNTTETFGRT IPGNPIGNSY TGFPSIIIGD DRELKSTDLV VDTKLVAPVG ESHITTVGAQ WWDAKVTDGI ADEDFQQTSW ALFAEDEWRL RDNLALTLGA RYEDHEAFGG HISPRAYLVW NTTDAWTLKG GVSRGYKTPT LNQLHDGING VTGQGSTITI GSPDLDPEIT TNTEIGAYYD NLANFNANVT LFHNKFKDKI DDGTPLANCF YTANPNQPGC VSYGPGFTQE NFAQSVNIGE AVTKGVEVAG RWQFAPAWAL ALNYTYTDSE QKSGINKGAP LTNTPEHMAH ARLSWAANDR LTLWFKGEYR GERARFTDRY DNLTAANKAL YDAVGDLKAY EVFHLGGSFK ATENLTFSAT IYNLFDKDFT SGSYYTTNTG STAWASDYTQ IGQSTTGTLE EGRRLWLSTV IEF
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