| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0798 |
|---|
| Symbol | |
|---|
| ID | 5108892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 907793 |
|---|
| End bp | 908824 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640502014 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_001186298 |
|---|
| Protein GI | 146305833 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.180919 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTGCGCC ACGGTTATCG ACGTACCTTG CTGCGGCGCT GGGCCTGCCT GGGCGCGCTG
GCGGCGTTGC TGCTGGCCAG TTTCATCGCC GATCTGGCCA CAGGCCCGGC TGGCCTGAGC
TGGTGGGACG TGGCGCGTGG CCTGTTGCAG CCGCAGCATC TGGACGCCGC GCAGGCGGTG
ATCATCCTGG AGATCCGTGT GCCTTATGCG CTGATGGCGC TGGTAGTAGG CGCCAGCCTG
GGTCTGGCCG GCGCGGAGAT GCAGACGGCG CTGAACAACC CCCTGGCCAG CCCCTTCACT
CTGGGCGTCG GCGCGGCGGC GACTCTCGGG GCGGCGCTGG TCATCCTGCT GCGGCCCAAT
CTGGCCGGGC TTGGCGCCGA TCTGCTGCTG CCACTGGCGG CCTTCGTCTG CGCCTTCATC
TCCTGCCTGC TGCTGCTTCT GGTGGCACGG GTGCTGGGCG AGGCGCTGCA CACCCTGGTG
CTGTTCGGTA TCGCCCTGCT GTTCGGGCTC AATGCGCTGG TCGGGCTGCT GCAGTTTCTC
GCCGATGCCG ATGCGCTGCA GCAGATCGTG TTCTGGACCC TGGGCAGCCT GGCGCGTGCC
GATCTGCAGC GGGTGGCGCT GGTGGCTGTG GTGCTTGCTC TATGCCTGAC CCTGGCGCTG
CGCCAGGCCT GGGCCATGAC CAGCCTGCGC GGCGGCGAGG AGCAGGCGCG CAGCCTGGGC
ATTCGCGTCG GTCGCCTGCG CACCTTCGTG CTGCTGCGGG TCAGCCTGCT AACCGGCGTG
GCCACTGCCT TCGTCGGCGA GGTCGGCTTC ATCGGCCTGG TCGGGCCGCA CGTGGCGCGC
CTGCTGCTGG GCGAGGATCA CCGTTTCTAC TTGCCCGGCA GCGCCCTGGC CGGTGCCTTG
CTGCTGTCGC TGGCCTCCCT GGCCAGCCGC GCGCTGCTGC CTGGGGTGAT TCTGCCGGTT
GGGCTGGTCA CTGCCGTGGT TGGCGTGCCG TTGTTTATCG GTCTGATTCT GGCGCGGGGG
CGCAGCCTAT GA
|
|---|
| Protein sequence | MLRHGYRRTL LRRWACLGAL AALLLASFIA DLATGPAGLS WWDVARGLLQ PQHLDAAQAV
IILEIRVPYA LMALVVGASL GLAGAEMQTA LNNPLASPFT LGVGAAATLG AALVILLRPN
LAGLGADLLL PLAAFVCAFI SCLLLLLVAR VLGEALHTLV LFGIALLFGL NALVGLLQFL
ADADALQQIV FWTLGSLARA DLQRVALVAV VLALCLTLAL RQAWAMTSLR GGEEQARSLG
IRVGRLRTFV LLRVSLLTGV ATAFVGEVGF IGLVGPHVAR LLLGEDHRFY LPGSALAGAL
LLSLASLASR ALLPGVILPV GLVTAVVGVP LFIGLILARG RSL
|
|---|
| |