| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0796 |
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| Symbol | |
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| ID | 5108890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 904729 |
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| End bp | 906678 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502012 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001186296 |
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| Protein GI | 146305831 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0550386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCACT GCCCTTATCG CCTGAGTCTG CTCGGCGCCA TTACCTTCGG TAGTCTGCTT
GCCACGCAGG CGCACGGCGC CGATGCCGCG CTGGAACTGC AGGCGCAGGA GATCACCGCG
GCAGCCATCG ACCGCAACGA GAGCGTCGAG GCCGAGCAGC TGCAGCGCTA CCAGGCCAGC
GACCTGCAGG AAGTGTTCGA ATCCAACCCC GAGGTATCCG TGGGCGGCGG CCCCGGCGTG
GCGCAGAAAC TCTACCTGCG CGGTCTGGAA GACACCTTGC TGAACATCAG CATCGACGGC
GCCAGCCAGC CAGGGCAGAC CTTCCACCAC ACCGGCCGCA TCGGCATCGA GCCGGAACTG
CTCAAGCGCG CCGAGGTACA GGCCGGTACC GGTGACGCCA CGGCCGGGCC AGGTGCGCTG
GGCGGCGCGG TTCGCTTCGT CACCAAGGAC CCGGACGACC TGCTGCGCGA AGGCGAGCAG
CTCGGTGCGC TGCTCAAGAC TGGCTATTTC AGCAATGGCG AGGGCTACAA GAGCAGTGCC
AGCGTGTTCG GCCGTTTCAA CCAGAACTGG TCGGCGCTGG CCATGACTAC CTATCAGGAT
CAGAACGATT ACGAGGACGG CAACAACGAC GATGTGCTCG GCACCGCAGC GCGGCAGAAG
CTCGGCTTCG CCAAGCTGGT GGGCAAGCTC AGCGACGAGC AGACGCTGCG CCTGAGCTAC
GAGAAGCGCA TCGACGAGGG CGAGCGCAGC CAGCGCCCGC AGTGGATCCC GAGCAGCTTC
AATCGTCTGT ATCCGCTGAG CACCGAACGC GAGACCTGGA CCCTCAACTA CGCCTGGCAG
CCGGTGAACA ACGACCTGCT GGATGTCGAG CTGACCACCT ACCACACCAC CAACGAACTG
GAGCAGGACG GCCGCTTCGG TCTGTACTTC GGCGATACCC GCAGCACCGG TTTCGACCTG
CGCAACACCA GCCGCATTGG CGCGCATCAG CTGACCTATG GCGTCGATTT GCGCGATGAC
CGTGCCACCC TCGGCCCGGC CGGCAATCGC GAGCTGGACC ATGAGGATGG CGAGGTACTC
GGCCTCTACC TGCAGGACCG CTACCAGATC ACCTCGCGTC TGCAGCTCGA CGCCGGCCTG
CGTTACGACC GCTACAAGCT CGATGACCGC GACAAGCAGA CCTTCACCGA GGACGGCATC
AGCCCCAACC TGGGCCTGCG CTACCAGCTG ACCCCTGAGC TGGCGGTCTT CGCCGGCCAG
GCGCGGGCGC TGCGCGGGCC GCAGGTGCGC GACGCGTTCA AGATGGACAG CTCCGGCAAT
GACCCGCACC TGAAGGCAGA GAAGGCGCGC ACCGACGAGG TCGGCTTCGA CTACCGCGAC
GGTGGTTGGG AGTTGAACGG CAAGGCCTAT ATCACCCGCA TCGAGGACGC CATCGCCGAT
CCCATCGGCC GGCCCAACCT GTACCTGAAC GTCGGCGACC TGAAGAGCAA GGGACTGCTG
CTCAGCACTG CCTACCACTG GCAACAGCTC AGCCTGGGCC TGAGCTACCA CCGCAACGAT
GCGCGCCTGG ATGGCGAGCG CCTCAACGTC TACGAATACA ACGGCCTGGG CACCAGCCTC
GGCGACACCT GGACCACCTT CGCCGACTAC CGTGCCAGCG ATAACCTCAC GCTCGGCTGG
CAGGGCCGTT TCGTGCGCGG CATCGACACC CTGCACACCG GCGTCGGCGA CGTGTCCAAG
CCAGGCTATG GCGTGCACGA CCTGTACGCC GAATGGCAGG CCGTGCCAGA GAGCCTGACG
GTGACCCTGA CGCTGAAGAA CCTGCTGGAC AAGCAGTATC TGGATCACGC CAGCAACGAG
GACTTCGAGC ACATTCCGGA CTACGAGGGT ATCCGTGGCT CCTACGAGCC GGGGCGTGAG
CTGCGTCTGG GCCTGGCGTG GCGAATCTGA
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| Protein sequence | MPHCPYRLSL LGAITFGSLL ATQAHGADAA LELQAQEITA AAIDRNESVE AEQLQRYQAS
DLQEVFESNP EVSVGGGPGV AQKLYLRGLE DTLLNISIDG ASQPGQTFHH TGRIGIEPEL
LKRAEVQAGT GDATAGPGAL GGAVRFVTKD PDDLLREGEQ LGALLKTGYF SNGEGYKSSA
SVFGRFNQNW SALAMTTYQD QNDYEDGNND DVLGTAARQK LGFAKLVGKL SDEQTLRLSY
EKRIDEGERS QRPQWIPSSF NRLYPLSTER ETWTLNYAWQ PVNNDLLDVE LTTYHTTNEL
EQDGRFGLYF GDTRSTGFDL RNTSRIGAHQ LTYGVDLRDD RATLGPAGNR ELDHEDGEVL
GLYLQDRYQI TSRLQLDAGL RYDRYKLDDR DKQTFTEDGI SPNLGLRYQL TPELAVFAGQ
ARALRGPQVR DAFKMDSSGN DPHLKAEKAR TDEVGFDYRD GGWELNGKAY ITRIEDAIAD
PIGRPNLYLN VGDLKSKGLL LSTAYHWQQL SLGLSYHRND ARLDGERLNV YEYNGLGTSL
GDTWTTFADY RASDNLTLGW QGRFVRGIDT LHTGVGDVSK PGYGVHDLYA EWQAVPESLT
VTLTLKNLLD KQYLDHASNE DFEHIPDYEG IRGSYEPGRE LRLGLAWRI
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