| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0791 |
|---|
| Symbol | |
|---|
| ID | 5108885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 895712 |
|---|
| End bp | 898132 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640502007 |
|---|
| Product | quinoprotein glucose dehydrogenase |
|---|
| Protein accession | YP_001186291 |
|---|
| Protein GI | 146305826 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGA ACAACAAGGT GCAGCCCCTG CGCATCACCC TGACGGCCTG GCTGGTCGCC
ATGCTCGGTG CGCTGCTGGC GCTGGGTGGC GCCTATCTGG CGTGGCTGGG CGGGTCCTGG
TACTACCTGC TGGCCGGGCT CGGTCTGCTG CTGGTGGGCG TGCTGATTCA TCGCCGCCAG
CGGGCGGCCC TGTGGCTGTA CGCCCTGGTG CTGCTGGCGA GCCTGGCCTG GACGGTGTAC
GAGGTGCGCT TCGACTGGTG GCAGATGGCG CCGCGCATCG ACCTGTGGTG CGTGCTCGGC
CTGTGGCTGC TGCTGCCGTG GATCAACCGG CATATCGCCC CCGGGCAGCC CTGGCGTGAC
GGCGCCAGCG TGGTGCTGGG CATCGGCCTG CTGCTGGGCG CGGGCATGGC GGGCTATTCG
CTGACCCAGG ATTACCATCG CCTGCCCGGC CGTTTCGACG AGCCGCGCAT GGCCGCTGCC
GCCGCGGTGC CAACCCGGCG TTCGGCCAGC GAATGGACAG CTTACGGTGG CTCGTCGCGT
GGCGAACGCT ACGCCAGTGC CGAGCAGATC ACCTCGGCCA ACGTCGGGCG GCTGAAGAAG
GCCTGGGAGT TTCACACCGG CGATCTGCCC GGTGAAGGCG ACCCCGGCGA GATTACCAAT
CAGGTGACGC CGCTGAAGGT CGGTGACAAC CTGTTCATCT GCACGCCGCA CAGCATCGCC
ATCGCCGTGG ATGCCGACAC CGGCGAGGAG CGCTGGCGCT TCGACCCGGC CATCAATCGC
CAGGCCGAGT ACTACCAGCA CATGACCTGC CGCGGCCTGG CCTATCACGA TGCGGCAGCC
TATGCCGGCC CGCTGATCGC GGCGCGAGAC GGCGCGGTCC CCGAGCTTTC GCCGCAGGCA
CCGCCACGTT GCACCCAGCG CCTGTTCCTG CCGACCAACG ACGCCACCCT GTACGCGCTC
GATGTGCACG ACGGCGAGCC TTGCGAGGAG TTCGGCGAGG GCGGCATGGT CGATCTCAAG
GTGGGGTTGG GCGACGACGC GCTGGGCGTC TACCTGCCCA CCTCGCCGCC GGTGGTCACC
GAGAAGCTGG TCATCGTCGG CGGTTCGGTG ACCGACAACG GCTCGGTGGA TTCGCCGGGC
GGGGTGATTC GCGCCTACGA CGTGCGCAGC GGCGAGCTGG TGTGGAACTT CGATCCCGGC
CGCCCCGATG CCACCGAGCC GCTGCCGCCC GGCGAGACCT ACGTGCGCAG TACGCCCAAC
TCCTGGACCA TCGCCACGGC GGACGAGGCA CTGGGCCTGG TGTACATCCC CATGGGCAAC
CAGACGCCCG ATCAGTGGGG TGTGCAGCGC AGCGCCGAGG CCGAGCGTTT CACCGCGGCG
CTGGTGGCAC TGGATCTGGA AAGCGGACGG GTGCGCTGGG AGTTTCGCAC CGTGCACCAT
GATCTGTGGG ACCGCGACCT GCCGTCCCAG CCCACCCTGG TGGATATCGA AGGCCCCGAG
GGGCCGGTGC CGGCGATCAT CCAGGCAACC AAGCGCGGCG ACCTCTACGT GCTCGACCGG
CGCAGCGGCG AGCCCATCGT GCCGGTCAGC GAGCATCCGG TACCGCAGGG CACGGTGGAG
GGCGACTTCA CCGCACCGAC CCAGCCGGCC TCCGCGCTCA GCTATGCCCC CGAGGAGCCG
CTGCACGAGC GCGACATGTG GGGCGGTACG CCGTTCGACC AGCTGATCTG CCGCATCCAG
TTCCATCGAC TGCGTTACGA GGGTGACTTC ACCCCACCTT CGGAGCAGGG TTCGCTGATC
TATCCGGGCA ACGTCGGGGT GTTCAACTGG CCCTCGGTGG CGGTCGATCC GCAGCGGCAG
ATTCTCTTCG GCGCGCCCAA TTACCTGGCC TTCGTCTCGC GTCTGGTCAA GCGCGAGGAG
GGCGGCGAGC AGGCCGGTGC CGGCGGCAGC GAACGCGGCC TGCAACCCAA CCTCGGCGCG
CCCTACATGG TCAGCCTGGA GCCTTTCCTG TCACCGCTGG GGTTGCCTTG CCAGGCGCCG
CCATGGGGCT ATGTCACCGC GGTCGACCTG CGCAGCATGG ACAAGGTCTG GCAGCGCAAG
AACGGCACCA GCCGCGACAG TGCGCCGCTG GGTATTCCCC TGACCGTCGG TGTGCCGAAC
CTTGGCGGCC CGTTGATCAC CGCCAGTGGC CTGGGCTTTC TCAGCGGCAC CCTGGACTAC
TACCTGCGTG CCTACGACAT GCGCACCGGC GAGGAGCTGT GGAAGGACAG GTTGCCGGCC
GGCGGCCAGG CCACGCCGAT CAGCTACGTC TCGGAAAAGA CCGGCAAGCA GTACGTGGTG
GTGATGGCCG GCGGGCACGG CTCGTTCGGC ACGCGCATGG GCGACTCGCT GGTGGCCTGG
ACGCTGGAGG AAGATGAGTA A
|
|---|
| Protein sequence | MFENNKVQPL RITLTAWLVA MLGALLALGG AYLAWLGGSW YYLLAGLGLL LVGVLIHRRQ
RAALWLYALV LLASLAWTVY EVRFDWWQMA PRIDLWCVLG LWLLLPWINR HIAPGQPWRD
GASVVLGIGL LLGAGMAGYS LTQDYHRLPG RFDEPRMAAA AAVPTRRSAS EWTAYGGSSR
GERYASAEQI TSANVGRLKK AWEFHTGDLP GEGDPGEITN QVTPLKVGDN LFICTPHSIA
IAVDADTGEE RWRFDPAINR QAEYYQHMTC RGLAYHDAAA YAGPLIAARD GAVPELSPQA
PPRCTQRLFL PTNDATLYAL DVHDGEPCEE FGEGGMVDLK VGLGDDALGV YLPTSPPVVT
EKLVIVGGSV TDNGSVDSPG GVIRAYDVRS GELVWNFDPG RPDATEPLPP GETYVRSTPN
SWTIATADEA LGLVYIPMGN QTPDQWGVQR SAEAERFTAA LVALDLESGR VRWEFRTVHH
DLWDRDLPSQ PTLVDIEGPE GPVPAIIQAT KRGDLYVLDR RSGEPIVPVS EHPVPQGTVE
GDFTAPTQPA SALSYAPEEP LHERDMWGGT PFDQLICRIQ FHRLRYEGDF TPPSEQGSLI
YPGNVGVFNW PSVAVDPQRQ ILFGAPNYLA FVSRLVKREE GGEQAGAGGS ERGLQPNLGA
PYMVSLEPFL SPLGLPCQAP PWGYVTAVDL RSMDKVWQRK NGTSRDSAPL GIPLTVGVPN
LGGPLITASG LGFLSGTLDY YLRAYDMRTG EELWKDRLPA GGQATPISYV SEKTGKQYVV
VMAGGHGSFG TRMGDSLVAW TLEEDE
|
|---|
| |