| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0788 |
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| Symbol | |
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| ID | 5108882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 890575 |
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| End bp | 892299 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502004 |
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| Product | PTS system, fructose subfamily, IIC subunit |
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| Protein accession | YP_001186288 |
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| Protein GI | 146305823 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component
[COG1445] Phosphotransferase system fructose-specific component IIB |
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| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTGC TGATCGTTAC CGCCTGCCCC AATGGTCAGG TCACCAGCGT GCTCTGCTCG
CGTCTGTTGC AGGCGGCAGC CGAGCGCCTG GGCTGGCAAA CCCGCGTCGA GGTGCACGAC
GCCCGCGCCA TCGGAGCGCC CTTGAGCGAG GCGGATATCG CCGCTGCCGA TCTGGTGCTG
GTGGTCAAGA CCGGCGAGCT GGCGCTCGGC CGTTTCGTCG GCAAACCCCT GCTGCAGGCC
ACGCCGGCCG AGGCGCTGGC CGACCCGCAG CGCTTTCTGC GCGAAGCCCC CGAGCGGGCC
CGGCCCTATG CCGAGGATGC CGCCGCGCCG AGCGGGCGCA AGCGGCTGGT GGCAGTCACT
GCCTGTCCCA CCGGCGTGGC GCACACCTTC ATGGCCGCCG AGGCGCTGCA GCAGGCCGCC
GCGCGCATGG GCATCGAGTT GCAGGTGGAA ACCCGCGGCT CGGTGGGCGC GCGCAACCTG
CTCGACGAGG CCGCCATCGC CGCGGCCGAT GCCGTGCTGC TGGCCGCCGA TATCGAGGTG
GACACCGCCC GCTTCGCCGG CAAGAAGGTC TATCGCTGCG GCACCGGCGT GGCGCTCAAG
CAGCCCCAGC AGACCCTGGA ACGCGCCCTG AGCGAGGCAC GCCCGCTGGC CGAGGCGGCG
CCCAGCGCCG GCAGTGCGCC AGCCACGAGC GGCGAGAAGT CCGGCCCCTA CAAGCACCTG
CTCACCGGGG TGTCCTACAT GCTGCCGATG GTGGTGGCCG GCGGTCTGCT GATCGCCCTG
TCGTTCGTCT TCGGTATCGA GGCGTTCAAG GAGGAGGGCA CCCTGGCCGC TGCGCTGATG
AAGATCGGCG GCGAGACCGC GTTCCAGCTG ATGGTGCCGT TGCTGGCCGG CTATATCGCC
TATTCCATCG CCGACCGTCC GGGCCTGGCA CCGGGGATGA TCGGTGGGCT GCTGGCCAGT
TCGCTGGGCG CCGGCTTTAT CGGCGGTATC ATCGCCGGTT TTCTCGCCGG CTATTCGGCC
AAGGCCATCG CCCATTGGGT GCGCCTGCCG GCCAGCGTCG AGGCGCTCAA GCCGATTCTG
ATCATTCCGC TGGTGGCCAG CCTGTTCACC GGCCTGGTGA TGATCTACCT GGTCGGCAGC
CCGGTGGCCG GCATGCTCGC GGGGCTCACC GCCTTTCTCG ACGGCATGGG CAGCACCAAT
GCGATCCTGC TCGGCGTGCT GCTCGGCGGC ATGATGTGCG TCGATCTCGG CGGGCCGATC
AACAAGGCGG CCTATGCCTT CTCCGTCGGC CTGCTGGCCT CGAGCAGCTA TGCGCCGATG
GCGGCGACCA TGGCCGCCGG CATGGTGCCG CCCATCGGTA TGGCCATCGC CACCGTGCTG
GCGCGGCGCA AGTTCGCCGA GAGCGAACGC CAGGCCGGCA AGGCGGCCGG GGTGCTGGGA
CTGTGCTTCA TCTCCGAAGG GGCGATACCC TTCGCCGCCA AGGACCCGCT GCGGGTGATC
CCGGCGAGCA TCGCCGGCGG CGCCCTGACC GGCGCGCTGT CGATGTACTT TGGTTGCAAG
CTGATGGCGC CGCATGGCGG GCTGTTCGTG CTGCTGATCC CCAATGCGAT CAACCATGCC
TTGCTCTACC TGCTCGCCAT CGTCGCCGGC AGCCTGGTCA CTGGCGTGCT CTATGCGCTG
ATCAAGCAGG GCGAAGCGCA GCCGCTGGTG GCCAGCGCGC AATGA
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| Protein sequence | MNLLIVTACP NGQVTSVLCS RLLQAAAERL GWQTRVEVHD ARAIGAPLSE ADIAAADLVL
VVKTGELALG RFVGKPLLQA TPAEALADPQ RFLREAPERA RPYAEDAAAP SGRKRLVAVT
ACPTGVAHTF MAAEALQQAA ARMGIELQVE TRGSVGARNL LDEAAIAAAD AVLLAADIEV
DTARFAGKKV YRCGTGVALK QPQQTLERAL SEARPLAEAA PSAGSAPATS GEKSGPYKHL
LTGVSYMLPM VVAGGLLIAL SFVFGIEAFK EEGTLAAALM KIGGETAFQL MVPLLAGYIA
YSIADRPGLA PGMIGGLLAS SLGAGFIGGI IAGFLAGYSA KAIAHWVRLP ASVEALKPIL
IIPLVASLFT GLVMIYLVGS PVAGMLAGLT AFLDGMGSTN AILLGVLLGG MMCVDLGGPI
NKAAYAFSVG LLASSSYAPM AATMAAGMVP PIGMAIATVL ARRKFAESER QAGKAAGVLG
LCFISEGAIP FAAKDPLRVI PASIAGGALT GALSMYFGCK LMAPHGGLFV LLIPNAINHA
LLYLLAIVAG SLVTGVLYAL IKQGEAQPLV ASAQ
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