Gene Pmen_0774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0774 
Symbol 
ID5108868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp869545 
End bp870762 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content50% 
IMG OID640501990 
Producttype II secretion system protein 
Protein accessionYP_001186274 
Protein GI146305809 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAAA AAGCTCTAAA AACCAGCGCA TTCAAGTGGG AAGGCAAAGA CAGACGCGGC 
GCGGTCGTCT CCGGGGTCAT CAATGGGCAG AACCCCGCAT TGGTCAAGGC ACAGCTGCGC
AAGCAGGGTA TCAACCCGAC CAAGGTACGC AAGGAGTCTT CTCTGTCCTT CGGCAAGGGT
AAAAAGATCA AACCCATGGA TATCGCCCTG TTTACCCGGC AGATGGCGAC CATGATGAAG
GCCGGTGTAC CACTGCTACA GTCCTTCGAC ATCATTGGCG AGGGCTTCGA CAATCCCAAT
ATGCGCAAGC TGATCGATGA GGTGAAGCAG GAAGTGGCTG CCGGTAACAG CTTCGCTACC
TCACTGCGAA AGAAGCCCGA GTACTTTGAC GAATTGTATT GCAATCTGGT TGAGTCTGGC
GAACAGGCCG GCGCCTTGGA AAACCTGCTG GATCGCATCG CCACTTACAA GGAAAAAACC
GAAGCGCTGA AGGCGAAAAT CAAGAAAGCG ATGAACTACC CCATCGCGGT AATTGTCGTC
GCAGTTGTTG TCACAGCAAT CCTCCTCATT AAGGTAGTAC CTCAATTTCA AGACGTTTTT
TCTAACTTCG GAGCAGAACT ACCGGCCTTC ACCCAAATGA TAATTGGACT ATCTGAAATC
CTTCAAAAGT GGTGGTTTGT AGTACTAATC GCCCTAATGG GAAGCGCCTT CATTTTTAAA
GAAAGCCTTA AACGCTCAAA AAAAATGAGA GATACCGTAG ACCGCGGAAT ACTAAAGCTC
CCTATTGTCG GTGATATCTT ATACAAATCT GCCGTCGCCC GATTTGCTCG TACATTATCT
ACAACCTTTG CCGCTGGCGT GCCGCTAGTG GATGCGCTGG ACTCTGTCTC CGGCGCCACC
GGCAATGTCG TTTTCAAGAA TGCTACCAAC AAAATCAAAG CCGATGTTTC CACCGGCATG
CAATTGAATT TCTCCATGCG CACCACCGGT ATTTTTCCGG CAATGGCGGT GCAGATGACT
GCTATTGGGG AAGAGTCCGG CGCACTTGAT GAAATGCTTG ACAAAGTAGC TAGCTTCTAC
GAGACCGAAG TGGACAACAT GGTCGATGGC CTGACTGCTC TTATGGAGCC CATGATAATG
GCTGTTCTTG GTGTTTTAGT CGGCGGACTG GTAATTGCTA TGTACCTGCC TATCTTCCAG
CTAGGCGCCG TCGTCTAA
 
Protein sequence
MAEKALKTSA FKWEGKDRRG AVVSGVINGQ NPALVKAQLR KQGINPTKVR KESSLSFGKG 
KKIKPMDIAL FTRQMATMMK AGVPLLQSFD IIGEGFDNPN MRKLIDEVKQ EVAAGNSFAT
SLRKKPEYFD ELYCNLVESG EQAGALENLL DRIATYKEKT EALKAKIKKA MNYPIAVIVV
AVVVTAILLI KVVPQFQDVF SNFGAELPAF TQMIIGLSEI LQKWWFVVLI ALMGSAFIFK
ESLKRSKKMR DTVDRGILKL PIVGDILYKS AVARFARTLS TTFAAGVPLV DALDSVSGAT
GNVVFKNATN KIKADVSTGM QLNFSMRTTG IFPAMAVQMT AIGEESGALD EMLDKVASFY
ETEVDNMVDG LTALMEPMIM AVLGVLVGGL VIAMYLPIFQ LGAVV