| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0727 |
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| Symbol | |
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| ID | 5109057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 815573 |
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| End bp | 817486 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501940 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_001186227 |
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| Protein GI | 146305762 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.594395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCAC GACGCACCCG CAAAGACGAC GGCAGCCAGT GGACCGTAGC CGACAGCCGT
AGTGTCTACG GCATTCGCCA TTGGGGCGCC GGCTATTTTT CGATCAATGA CGCCGGTCGT
ATCGAGGTGC GTCCCAACGG CCCGGACAGC TCGCCCATCG ACCTCTACGA TCAGGTCGAT
GAACTGCGCC AGAGCGGCCT GTCGCTGCCC CTGCTGGTGC GCTTTCCGGA CATCCTGCAG
GATCGCGTGC GCCGTCTGAC CGGGGCCTTC GACGCCAGCA TCGCGCGCCT GGATTACCAG
AGCCGCTACA CCGCGCTGTA CCCGATCAAG GTCAACCAGC AGGAGGCGGT GATCGAGAAC
ATCATCGCCA CGCAGAATGT TTCCATCGGC CTCGAGGCCG GCTCCAAGCC CGAGCTGCTG
GCCGTGCTGG CGCTGGCGCC GAAGGGCGGC ACCATCGTCT GCAATGGCTA CAAGGACCGC
GAGTTCATCC GCCTGGCGCT GATGGGGCAG AAGCTCGGCC ACAACGTGTT CATCGTCATC
GAGAAGGAAT CCGAAGTACG CCTGGTGATC GAGGAGGCGG CCGATCTCAA GGTCGCGCCG
CAGATCGGTC TGCGCGTGCG CCTGTCTTCG CTGGCATCTT CCAAGTGGGC CGACACCGGC
GGCGAGAAGT CCAAGTTCGG CCTGTCCGCC GCGCAGATCC TGCAGGTGGT CGAGCGTTTC
AAGGCCGCCG GGCTGGACCA GGGCATCCGC CTGCTGCACT TCCATATGGG CTCGCAGATC
GCCAACATCG CCGACTATCG CAAGGGCTTC CGCGAAGCCA TCCGCTATTA CGGCGAACTG
CGCGCCATGG GCCTGCCGGT CGATCACATC GATGTCGGCG GCGGTCTCGG CGTGGACTAC
GACGGCACCC ACTCGCGCAA CGCCAGCTCG ATCAACTACG ACATGCAGGA CTACGCCGAT
GCCGTGGTCG ACATGCTCAA GGAATTCTGC GACCGCCAGG AAATCCCCCA TCCGCACATC
TTCTCCGAGA GCGGCCGGGC GATGACCGCG CACCACGCCG TGCTGCTGGT GCAGGTCACC
GACGTCGAGC GGCACAACGA CAAGGTGCCG GAGATCGATC CGAGCGTCGA ACAGCCGGAA
GTGCTGCAGG TGCTGATCGA GCTGCTCGAG GACAGCGACC CGGAGATGGT CGCCGAGACC
TACTGGCGCG CCACCCACTA CATCGAGGAA GTGGCCGCGC AGTACTCGGC CGGCAAACTC
AGCCTGGCGC AGAAGGCCCT GGCCGAGCAG TGCTACTTCG CCATCTGCCG TCGCCTGCAC
AACCAGCTCA AGGCCCGTCA GCGCTCGCAC CGTGCGGTGC TCGACGAACT CAACGACAAG
CTCGCCGACA AGTACATCTG CAACTTCTCG GTGTTCCAGA GCCTGCCAGA CACCTGGGCC
ATCGGCCAGA TCCTGCCGAT CCTGCCGCTG TCGCGCCTGG ACGAGGAGCC GCTGCGCCGC
GCGGTGCTGC AGGACCTGAC GTGCGACTCC GACGGCAAGA TCCGCCAGTA CGTCGACGAG
CAGTCCATCG AGACCAGCCT GCCGGTGCAC GAGATCCGCG AGGGTGAGGA CTATGTGCTG
GGCATCTTCC TGGTCGGCGC CTACCAGGAA ATTCTCGGCG ACATGCACAA CCTGTTCGGC
GATACCGACT CGGTGAACAT CTACCAGGCG GCCGACGGCA GCGTGGTGCA TGCCGGCATC
GAGACCCACG ACACCATCGA GGACATGCTG CGCTACGTGC ACCTGTCGCC CGAGGAGCTG
ATGACCCACT ACCGCGACAA GGTGGCCAGC GCCCGCATCA GCGCCCGCGA GCGTACGCAG
TTCCTCGATG CCCTGCGCCT GGGTCTGACC CGTTCCTCCT ACCTGGCTTC CTGA
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| Protein sequence | MSARRTRKDD GSQWTVADSR SVYGIRHWGA GYFSINDAGR IEVRPNGPDS SPIDLYDQVD
ELRQSGLSLP LLVRFPDILQ DRVRRLTGAF DASIARLDYQ SRYTALYPIK VNQQEAVIEN
IIATQNVSIG LEAGSKPELL AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI
EKESEVRLVI EEAADLKVAP QIGLRVRLSS LASSKWADTG GEKSKFGLSA AQILQVVERF
KAAGLDQGIR LLHFHMGSQI ANIADYRKGF REAIRYYGEL RAMGLPVDHI DVGGGLGVDY
DGTHSRNASS INYDMQDYAD AVVDMLKEFC DRQEIPHPHI FSESGRAMTA HHAVLLVQVT
DVERHNDKVP EIDPSVEQPE VLQVLIELLE DSDPEMVAET YWRATHYIEE VAAQYSAGKL
SLAQKALAEQ CYFAICRRLH NQLKARQRSH RAVLDELNDK LADKYICNFS VFQSLPDTWA
IGQILPILPL SRLDEEPLRR AVLQDLTCDS DGKIRQYVDE QSIETSLPVH EIREGEDYVL
GIFLVGAYQE ILGDMHNLFG DTDSVNIYQA ADGSVVHAGI ETHDTIEDML RYVHLSPEEL
MTHYRDKVAS ARISARERTQ FLDALRLGLT RSSYLAS
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