| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0722 |
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| Symbol | |
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| ID | 5109052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 808572 |
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| End bp | 811127 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640501935 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_001186222 |
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| Protein GI | 146305757 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACGA TAACGACCAA CGACTCCTCT AAACTTATCT ATGACACAGC ATTCGCCTTG
CAGTACGCAT TTAGCCACGG CATCACCGGC ATGGTCGCTA GTCAGGCCTA TCAACTTGAA
AGCAACAATC TCAACTGGGG CTCACCATCA ACTAGCATGA CTGCTGGGAA CCGGATATTA
AAGTCCATCG TTTATCGAAA CACTCCAGCC CAAGACAGCG AAGGAAATAG CCTCGGCCTC
GCCAACGGTA CCCGGTCAGC CGAACTGACG GGCAGCAACT TCACCTACTC CAAACTGGCG
TGGAAAGAAG ACTATTCAGT CACTGCCAAT CAAGCTGGCT ACACGAGCAA ATACGTTCAG
AAGGACAACC TCACCGCCAG CCTCAACCTG CAAAAGTTTG GTAGCGGCAA GCCGCTCTCC
ATCAGCCAGG CACAGTCCAG CTATACCTAC ACGAAGGACA ACTCGCTCAA CGGCGACAGC
ATTTCAAGCA AGGAGACTGG CGCCCTAACC TTCTCAGGAA AGGCCGACTA CAAGCAGAGC
GCGGGCAACC AGATGCTTCA GTCGCTCACG ATCAACCAGT ACACCGATAA TTACAGTTCG
AGCCAAACCG AAAAGAATAA GACCCCACAG GGCATACAGA GCCAAACCGT AAGCTCATCC
TACAACTTCT CCCTGTCCAG CAAGGCCGGC CTAACCTACG ACGCCAGTAC AGGTAACTTC
ACACCTACAA GCTCACTCGA TAGCCTGACG TACAGCACCA AGAATGCCTC GTCCCTGTCA
CCTGCGGAAA ACCACAGCGG CACCTTTCAA GCCAAAGCTC TATCTAGCAA TGTGCTGACC
GAGCTCTCGG GCTATCTGAC CGGAACACGC AGCCTACTGG ATATCCAACT GGCCCTGCTG
GCAGGCGATG ACGTCATCAC CGGTACCGAC AAGCACCACA ACTGGCTCTT CGGCGGTGCC
GGCAATGACA AAATTACCGG TAATGCAGGT TCAGACGAAC TTTATGGCGG AGATGGCGAT
GACCAATTGT TCGGACTCGC TGGCGACGAC TTGCTATTTG GTGGGGCTGG AAACGATCTA
CTCGATGGTG GCAAAGGAGT TGACACTATG GTCGGGGGGA GTGGTGACGA CATCTATATC
CTAGATGACC ACCGCGAGCT CGAGCGCATC AACCAGCATG GCAGCGACAT CTACCATGAC
CCTGGCATCG ACACCCTGCG CATCACATAC AAGAGCATGG CCAGCGCGCC GTTGACCGTG
AATCTTAACG CAATCAACCT GCTTGAGATC GAAAACGTCC AGCTCATAGG TGCAGGCCCC
TTCGAAGTGC TCGGCAATGG CCTCGATAAT CGTCTTGATG CAGGCCGCGG CGCCAGCGTG
CTTCGCGGAG GAGCTGGTAA TGATACCTAT ATCGTTGGTC ACAAGGACGC CAAGGTATTC
GAAGCTGCCA ACGAAGGCAT CGATACTGTA CTCGCTTCTG TCTCCTTTAC GTTGGGCGCC
AATCTGGAGA ACCTCACCCT GCTCGGCAAG GCGGCGCTCA ACGGCACCGG AAACGAGCTC
TCCAACCTAC TGATCGGCAA CGATGGCAAC AACATCCTAG ACGGCGGCAC CGGCGCCGAT
CGCATGGAGG GCGGCAAGGG CAACGATACC TATATCGTTG ACCATGAGGA CGACGTGGTC
GTGGAAAACG ACAAGGAAGG CATCGACACC GTCAAGGCAT CCGTTACCTA CACACTCGGC
GCCAACGTAG AGAACCTGAT TCTCACTGGC AGCGGCGATA TAGACGGCAG CGGCAACGAG
CTGAACAACG CAATTACCGG CAATGACAAA GACAACCGTC TCGATGGCGG AGCTGGAGTC
GACAAACTGG CCGGTGGCAA GGGTAACGAT ACCTATGTCG TCGACTTGAT CCAGAAAGGT
ACCGGTGACA AGGCCACCGC GGTGCTGGAG GACAGCATCG TCGAAAAAGC CAACGAAGGT
ACAGATACCC TGGAGTTGCG CAGCGACCGG CTACCATCGG AGTTCACTGG AACCGCTAGC
ATCACCCTCG GCGCGAACCT GGAAAACCTC GATGCACGCA ACACCGGAGC ACTCAAGCTC
ACCCTCACCG GCAACGCACT AAACAACGAA ATCTGGGGTA ACGCGGGCGA CAACATACTG
AACGGTGGCG CAGGCAACGA CATTCTGCAT GCCGGAAGCG GTAGGAATAA CATCCTGATC
GGTGGTACCG GTGCCGACAC CATGTACGGT GGCGTAGGCG ACGACACCTT CCGTTTTACC
TCGCTCAAGG ACCTCGGTCT TGGAGAGGGT AAGCAGGATG AGATTCACGA TTTCAACAAA
GAAGGAAAGG ACAAACTCGA CTTCAGCCCC CTCAAAGGAT GGCAATTCAT GGGAGTCGGC
GAGCAGTTCG CTGCCACTGG CGCCAAGCAA CTATGGGCCG TCCAGGAAGG TCAAGACCTG
ATCCTCTACG GCAATAGCGG CGGCACCTTA GCCGCAGACT TCTCCATTAA ACTGGTGGGC
ATATCCGAAC TGAGTGCTGG AGACTTTAGC TTCTAA
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| Protein sequence | MATITTNDSS KLIYDTAFAL QYAFSHGITG MVASQAYQLE SNNLNWGSPS TSMTAGNRIL
KSIVYRNTPA QDSEGNSLGL ANGTRSAELT GSNFTYSKLA WKEDYSVTAN QAGYTSKYVQ
KDNLTASLNL QKFGSGKPLS ISQAQSSYTY TKDNSLNGDS ISSKETGALT FSGKADYKQS
AGNQMLQSLT INQYTDNYSS SQTEKNKTPQ GIQSQTVSSS YNFSLSSKAG LTYDASTGNF
TPTSSLDSLT YSTKNASSLS PAENHSGTFQ AKALSSNVLT ELSGYLTGTR SLLDIQLALL
AGDDVITGTD KHHNWLFGGA GNDKITGNAG SDELYGGDGD DQLFGLAGDD LLFGGAGNDL
LDGGKGVDTM VGGSGDDIYI LDDHRELERI NQHGSDIYHD PGIDTLRITY KSMASAPLTV
NLNAINLLEI ENVQLIGAGP FEVLGNGLDN RLDAGRGASV LRGGAGNDTY IVGHKDAKVF
EAANEGIDTV LASVSFTLGA NLENLTLLGK AALNGTGNEL SNLLIGNDGN NILDGGTGAD
RMEGGKGNDT YIVDHEDDVV VENDKEGIDT VKASVTYTLG ANVENLILTG SGDIDGSGNE
LNNAITGNDK DNRLDGGAGV DKLAGGKGND TYVVDLIQKG TGDKATAVLE DSIVEKANEG
TDTLELRSDR LPSEFTGTAS ITLGANLENL DARNTGALKL TLTGNALNNE IWGNAGDNIL
NGGAGNDILH AGSGRNNILI GGTGADTMYG GVGDDTFRFT SLKDLGLGEG KQDEIHDFNK
EGKDKLDFSP LKGWQFMGVG EQFAATGAKQ LWAVQEGQDL ILYGNSGGTL AADFSIKLVG
ISELSAGDFS F
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