| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0721 |
|---|
| Symbol | |
|---|
| ID | 5109051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 803022 |
|---|
| End bp | 808316 |
|---|
| Gene Length | 5295 bp |
|---|
| Protein Length | 1764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640501934 |
|---|
| Product | hemolysin-type calcium-binding region |
|---|
| Protein accession | YP_001186221 |
|---|
| Protein GI | 146305756 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC TCCCCGGGAA CCAAACGGAT TACAGCTTCA GCCGCAACGA TGGCAAGCTT
GTTGTCATTC GCAATAGCGA CAACCAAGTG CTTGTGGAGA GTGCCGATGA CTTCACTGTG
GAGTTCGGCG ACGGCAGCAC CATCAATCTG AGCCAGAGTT TCAATAACAA GATCGCTGAC
TCTTCTAGCC TGTTCTTCGA ATCCCCGTCG AGCGCCGCGT TGGTCGGTGG CGGATATGTA
CTGGTATGGG AACATTACGG CGGGCAGGAC GGCGATGCTG GTGAAGGCGT AACCCTGCAG
CACTATGACG CCTCCGGTAA GTTGCTCAAG GAAAGCCTAC TGGTATCTGG CGAAGCCGAA
GATCCCACTG TTGCCGCCAC CGCAGACGGC GGCTATATCG TTGCCTGGAG CACAGAGTCC
GGCTCGACCA GTTCGGTTCG CATCCAGCAA TTCGACAAGG ACGGCACCGC CAAAGGCGCC
CCCCAGACGG TCGCCAGCAG CAAAAGCGCA GAGCTGGAAG ACGCAGTAGT CACCGTACTG
CCCAATGGCA GCTACGTGGT GTCCTGGGTC TCGGCTGTCG AAAAGAACGA CAAGGAGACC
GGCGACCTTT TTCTACAAGT TTACAGCGCA TCGGGCAGCA AAATTGGCGT AGTCCAGAAG
GTCAACAGCA CCATCACCAA TAGCGTACCG GACGACCAGA TCATACTGCC GAATCCGCTT
GAGCAAGGCG GCTTCCTAAT AGCCTATACC CATGAAACGC TTATAAGCAG CGAGTGGGTG
GTGGATTGGA ACTGGGAGAA TGGCGGCTAC TTCACAAAAC AGTACCAAAG CAGCCTGTAT
GTACGCAGCT TCAATGCCAA CGGCACGCCC AAAAGTGCCG AACCACAACT GCTGCACAGT
CTCGAGACCC AGTACCCGTA TGCCAGCTAC TACTCTCTGG TCAAGACAAA TGAAGGCTAT
CTGGCGAGTT GGGTAGCCAA TGTCGAAGCA GACCCTATAT TCGGCCGCAC CCTGATTGCG
CAGAAACTCA ACAGCGCATT AGAGCCTGTT GGCGATGCAG AGGTCGTAAT CCCAGTCGGC
AATCCCAATG CCAACGACGC CAGCCTGACA CTGCTGGCAG ACGGCACTTA TTTGGCCGTC
TGGTCGACGT ACAATTGGAG CGATGGGAAC ACCACCTACG CCAAACTTCT GGACGCTGCC
CTCCAGCCCC TGGGCGATAA CTTCATCGTC AATGCTTCTG GTACTTCGTA TGAAGCCAAA
GTCACCGCCC TGCCGGACGG TGGGTTTATC ATCACATGGA CCAATGCCAA TGAAAACGGC
GACAGCGGCT CATCGCTGTT CAGCCAGCGC TACGATGCCG ATGGCAGACC GACCGGTAAT
GCCATCACCG TGATCGAGGG TGATGACGGC GACAATAGCC TGACCTGGAC TGGCGATGAC
GACGTCATCC TCCGTGGCGG TGCCGGCGAC GACAGGCTAG CGGGGGGCAA CGGCAACGAT
ATCCTCGATG GCGGTCAAGG TGACGACACA GCAATCTTTA CCGGCGATCA GGCCGACTAC
AGCTTCAGCC TCGACCCTCA GGGCAGGTTG CAGATTGCCA AGGGCAACCT CCGCGATACC
CTGATCAGCA TCGAACAACT CCAGTTCGCC GATGGATCTA TCACGGTCGA CGATGGCAGC
CAGCTTCTGG AAAGTGACAA CTCGATCGAC TCCGAAACGC CCGCTACCGC AACCCTGAGC
GATGGCAGTC AAGTGGTGAT CTGGAAGCAA GGCTCGGAAG TGCAAATCCA GTTTTTCCGC
GATGGGAGCT GGCAACAAGC TGTCTCAAGC GGTATTGAAT ACGAGCGCGG CTCGTTGAGC
GTCAAAGCGA TGGGTGATGG TTTCATCCTT GGCTGGGGAA ACTACGAGGG CGATGCCTTC
TATGCTCAGC GCTACGATGC TGCAGGTCAG CCGACTGGTC AGGCAATCGA GCTATCGAGA
GTCGATACTG CTCGAAATGT TGATGATATT TCGGCGACGC AACTGAAAGA CGGCAGCTTC
GTCCTCGCCT GGACCGAAGA GCCCCCCGAC CAATGGATTC CGGATGCGTC TGGCTGGGGC
GGTGAGTACG TCGAAAGCGA GGGCCAAGCC TACATTCAGC TATTCAATGC CGACGGCAGC
ACCAAGGGGC AACCGATAGC CCTTGCCACC GGAAACCTGC AGGCCTTCGA GCCCAGTGTA
AGCGCACTAC CCAATGGTGG CTTTGTGGTC GTGTGGGAAT ATGTGAATGA CGCTAAAGAA
AGCGAGGAAA TCTACCTGCA GCGTTTCAAG GCCGACGGTA CGCCGGACGG CAAGGCCATT
CAGGTCAATA CCAGCACCAA GGGCGACCAA GGCGATCCGG AAGTAGTCAC CCTCGCAGAT
GGCAGCTATG TCGTCACCTG GACCCGCGAG ACCCATGATG ACTTCAAATA TAAGGACGAT
ATGGGCAATA CCGTGGTCGA GGAGCGCACC GTCGATACGC ATATATTCAT GCAGCGCTTC
AGCGCAGACG GCAAGAAACT GGGTGGCGAG ACCCAGGTCA ACAGCACTCC TGGTTTCTAT
AACGACCCGG CCATTACTGC CCTGGAGGGC GGTGGCTACG TCATCACTTA TGCGACCAGT
GATGAACGTG AGCTGTACAA CGGCACCTCA AGGCTCTACG CACAGATCTA CGACAAGAAT
GGCGCCAAGG TCGGCGACGA ATTGGTGATC GCCAGCTCTC CCAACCAGGA CTTCTTCCCC
TCGGTAACAG CCAGCGCCGA CGGCGGCTTC CTGGTCACCT GGGAAGCCTC AGAGCGCACT
GCCAACTATG GTGGAGGCAG CGGCGATATT TACGTCAAAC GCTTCGACGC TAATGGCAAC
TCCCTGACGC TATCGGGCGA CGACGGCGAC AACACCTTGA CCTGGACCGG CAGCAGCGGC
GTCAGCCTGG ATGGCGGCGC AGGCAACGAC ACCCTTACCG GCGGCGACGG CCATGACGTG
CTGATCGGCG GTGCAGGTAA CAATGTGCTG AAAGGTGGCA AGGGCAACGA CCTCTACATC
ATCGAGAATG CCAACGACAT TCTCATCGAA GAGGCCGGCG GCGGTATCGA TACGGTCATG
ACCGGCGCTA GCTACACGCT GGGCGAGCAC CTGGAAAACC TGACCCTGAC CGGCGATGCA
GACATCAATG GGACCGGCAA TAACGCCGAA AACCGACTGG TCGGCAATCG CGGCAACAAC
ATCCTGGATG GGGGCGCCGG GGCCGACACC CTGATTGGCG GCGAAGGTGA CGACATCTAT
ATCGTCGACA ACTTGAGAGA TGTGGTCATC GAAAAAGAGG GTGAAGGCAC TGATACTGTG
CGCGCCTCAG TCACCTGGAC GCTGGGCACC AACCTGGAAT ACCTCGAGCT GACCGGCAGC
GCCAACCTCA GTGGCACCGG CAATGAGCTG GACAATAGAC TGATCGGCAA CGACGGCAAC
AACAGCCTCA ATGGCGGGGC TGGTAACGAC TATCTCGATG GTGGCAAAGG CCTGGACAAG
TTGATCGGCG GCATCGGTGA CGACACCTAC ATTGTCGATC TGGTCCAGAA GGGTACGGGG
GCGAAGGCCA GCGTCGCTCT GGAGGACACG GTCACGGAAG CGGCCAATGC CGGCGACGAC
GCTCTGATCC TGCGTGGCGA AGTACTGACC GAGAACTACA CGACCCTGAC CCTGGGTGCC
AACCTGGAGA CCCTGGACGC CAGCCAAACC GGGCTCAGCA GACTTCATCT AAGCGGCAAC
GCCGGCGACA ATGTCCTGAT AGGCAACGAT GCCGATAATG TCCTTGATGG CAAGGCCGGC
ATCGACACGC TGATTGGCGG CAAGGGCAAC GATACCTATG TGCTTGATCG TCAGGAAGAA
TTGGCCTTGG TAGAGGAAAT TGCGGGTGAA GGTGACGACA CTCTGCGAAT CACCTACCGG
AACAACTCGA AGACTGAGGC GTTGGTCGTC GATCTCAATC AGGCCAACCT GCAGCATGTC
GAAAATATTC AGCTGACCGG CTCCGGCATA TTCGAGCTGA TAGGCAATGA TTTCGCTAAC
GTCCTCGACG GCGGTAACAA TGCTGCCGTA CTCAGGGGCG GAGCAGGTGA CGATACCTAT
ATCGTTGGGC ACAAGGACGC CCAGGTCATT GAACTGGACG GCGAAGGAGA CAATGACACC
GTCAAATCCA CGGTGAATTG GACCCTCGGC GCCAATCTGG AAAATCTCAC CCTGCTCGGC
AAGGCGGCGC TCAATGGCAC CGGAAACGAG CTCTCCAACC TACTGATCGG CAACGATGGC
AACAACATCC TAGACGGCGG CACCGGCGCC GATCGCATGG AGGGCGGCAA GGGCAACGAT
ACCTATATCG TTGACCATGA GGACGACGTG GTCGTGGAAA ACGACAAGGA AGGCATTGAC
ACCGTCAAGG CATCCGTTAC CTACACACTC GGCGACAACG TAGAGAACCT GATTCTCACT
GGCAGTGGCG ATATAGACGG CAGCGGCAAC GAGCTGAACA ATGCGATTAC CGGCAATGAG
AAAGACAACC GTCTCGATGG CGGGGCCGGG GTCGACAAAC TGGCCGGCGG CGGGGGTAAC
GATACCTATA TCGTCGACCT GATCCAGAAA GGTACCGGTG CCAAGGCCAC CGCGGTGCTG
GAGGACAGTA TCGTCGAAAA AGCCAACGAA GGTACCGACA CCCTGGAGTT GCGCAGCGAC
CGGCTACCAT CGGAATTCAG TGGCACCGCT AGTATTACTC TCGGCGCGAA CCTGGAAAAC
CTCGACGCAC GTAACACCGG CACACTCAAG CTCACCCTTA CCGGCAACGC TCTGAACAAT
GAAATCTGGG GTAACGCGGG CGACAACACC CTGAACGGTG GTGCGGGCAA CGACATTCTG
CATGCTGGCA ACGGCGTCGG CAGCAATAAC ATCCTGATCG GTGGCGCCGG AGCGGACATC
ATGCATGGAG GCGCGGGCGA CGACACCTTC CGCTTTACCT CGCTCAAGGA CCTCGGTCTT
GGGGAGGGTA AGCAGGATGA GATTCACGAT TTCAACAAAG AAGGAAAGGA CAAACTCGAC
TTCAGCCCCC TCAAAGGATG GCAATTCATG GGAGTCGGCG AGCAGTTCGC TGCCACTGGC
GCCAAGCAAC TATGGGCCGT CCAGGAAGGT CAAGACCTGA TCCTCTACGG CAATAGCGGC
GGCACCTTAG CCGCAGACTT CTCCATCAAA CTGGTGGGCA TATCCGAACT GAGTGCTGGA
GACTTTAGCT TCTAA
|
|---|
| Protein sequence | MSILPGNQTD YSFSRNDGKL VVIRNSDNQV LVESADDFTV EFGDGSTINL SQSFNNKIAD
SSSLFFESPS SAALVGGGYV LVWEHYGGQD GDAGEGVTLQ HYDASGKLLK ESLLVSGEAE
DPTVAATADG GYIVAWSTES GSTSSVRIQQ FDKDGTAKGA PQTVASSKSA ELEDAVVTVL
PNGSYVVSWV SAVEKNDKET GDLFLQVYSA SGSKIGVVQK VNSTITNSVP DDQIILPNPL
EQGGFLIAYT HETLISSEWV VDWNWENGGY FTKQYQSSLY VRSFNANGTP KSAEPQLLHS
LETQYPYASY YSLVKTNEGY LASWVANVEA DPIFGRTLIA QKLNSALEPV GDAEVVIPVG
NPNANDASLT LLADGTYLAV WSTYNWSDGN TTYAKLLDAA LQPLGDNFIV NASGTSYEAK
VTALPDGGFI ITWTNANENG DSGSSLFSQR YDADGRPTGN AITVIEGDDG DNSLTWTGDD
DVILRGGAGD DRLAGGNGND ILDGGQGDDT AIFTGDQADY SFSLDPQGRL QIAKGNLRDT
LISIEQLQFA DGSITVDDGS QLLESDNSID SETPATATLS DGSQVVIWKQ GSEVQIQFFR
DGSWQQAVSS GIEYERGSLS VKAMGDGFIL GWGNYEGDAF YAQRYDAAGQ PTGQAIELSR
VDTARNVDDI SATQLKDGSF VLAWTEEPPD QWIPDASGWG GEYVESEGQA YIQLFNADGS
TKGQPIALAT GNLQAFEPSV SALPNGGFVV VWEYVNDAKE SEEIYLQRFK ADGTPDGKAI
QVNTSTKGDQ GDPEVVTLAD GSYVVTWTRE THDDFKYKDD MGNTVVEERT VDTHIFMQRF
SADGKKLGGE TQVNSTPGFY NDPAITALEG GGYVITYATS DERELYNGTS RLYAQIYDKN
GAKVGDELVI ASSPNQDFFP SVTASADGGF LVTWEASERT ANYGGGSGDI YVKRFDANGN
SLTLSGDDGD NTLTWTGSSG VSLDGGAGND TLTGGDGHDV LIGGAGNNVL KGGKGNDLYI
IENANDILIE EAGGGIDTVM TGASYTLGEH LENLTLTGDA DINGTGNNAE NRLVGNRGNN
ILDGGAGADT LIGGEGDDIY IVDNLRDVVI EKEGEGTDTV RASVTWTLGT NLEYLELTGS
ANLSGTGNEL DNRLIGNDGN NSLNGGAGND YLDGGKGLDK LIGGIGDDTY IVDLVQKGTG
AKASVALEDT VTEAANAGDD ALILRGEVLT ENYTTLTLGA NLETLDASQT GLSRLHLSGN
AGDNVLIGND ADNVLDGKAG IDTLIGGKGN DTYVLDRQEE LALVEEIAGE GDDTLRITYR
NNSKTEALVV DLNQANLQHV ENIQLTGSGI FELIGNDFAN VLDGGNNAAV LRGGAGDDTY
IVGHKDAQVI ELDGEGDNDT VKSTVNWTLG ANLENLTLLG KAALNGTGNE LSNLLIGNDG
NNILDGGTGA DRMEGGKGND TYIVDHEDDV VVENDKEGID TVKASVTYTL GDNVENLILT
GSGDIDGSGN ELNNAITGNE KDNRLDGGAG VDKLAGGGGN DTYIVDLIQK GTGAKATAVL
EDSIVEKANE GTDTLELRSD RLPSEFSGTA SITLGANLEN LDARNTGTLK LTLTGNALNN
EIWGNAGDNT LNGGAGNDIL HAGNGVGSNN ILIGGAGADI MHGGAGDDTF RFTSLKDLGL
GEGKQDEIHD FNKEGKDKLD FSPLKGWQFM GVGEQFAATG AKQLWAVQEG QDLILYGNSG
GTLAADFSIK LVGISELSAG DFSF
|
|---|
| |