| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0720 |
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| Symbol | |
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| ID | 5109050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 801175 |
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| End bp | 802893 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640501933 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001186220 |
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| Protein GI | 146305755 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGGT TATCGCAAAC CGACCTCGAG CGCACCCTGA TCGCTTGCCG TGCGAGCTTT
TTCTCTGTGG CGCTCTTCAG TTTTTTCGTC AATCTATTGA TGCTGGTGCC TTCGTTCTAC
ATGCTGCAGG TCTATGATCG GGCCGTCTCA AGCGGTAGCG AAACCACACT GCTCATGCTG
ACCCTGATCA TGCTGTTTCT GATGATCACC TTGGGGTTAT TGGAGTGGGT TCGATCTCGC
ATCATGGTGC GCATCAGCAC GCGCCTCGAG CATGAATTGG GCGCACGTCT CTACAATGCC
AGTTTCAAGT TGGCATTGAA CTCTGGCGGA GTGCACGCCA GCACTCAACC GCTCAGCGAC
CTGAATGGCC TGCGTCAATT TCTCACCGGC AACGGCCTGT TCGCCTTCTT CGACGCGCCC
TGGTTGCCCA TCTACCTGGC AGTGATGTTC GTCTTTCATC CCTGGTTCGG CTGGCTCGGA
TTGATCAGCG CCGTGTTGCT GCTGGCGCTG GCAATGCTTA ACGAGCGCCT GACCCAAGCA
CCACTGCAGC AGGCCAATCG CGAACAGGGA CTTGCCACCG GCCTGACCAG CAAGAGTTTG
AATAACGCCG AGGTCATAGC GGCCATGGGC ATGCTGCCCA GCCTCCGTCA GCGTTGGCTG
AGCCAAGTCC ACAAGGTTCT GATGTTGCAG AGTCAAGCCA GTGATCGCTC GGGCGCGATC
ACCTCCCTGT CGAAAACCTT CCGCCAACTG GTGCAATCTC TGATCTTGGG GCTTGGTGCC
TACCTCGCTA TCAATCATGA AATCAGCGCC GGCCTGATGA TCGCCGGGTC GATTCTCCTG
GGCCGTGCAC TAGCCCCCAT CGATCAGATG ATCGGCGCCT GGAAGGGCTT TATCGGGGCC
CGTTCGCAAT ATGCCAATCT ACATGCGCTA CTGGCCAAAG TGGCGCAAGA TCCCACCCCT
ATGCGATTGC CCTCACCTAT CGGCAGCATC CGGGTAGAGA ACCTTAAGGC TGGGGCGCCA
ACCAGCAGCA AGCCCATCAT CCGCAATATC AGCTTTCAGG TCACGCCGGG CACCGCAGTT
GGAATTGTCG GTGCCAGCGG CTCGGGAAAA TCGACCCTCG CGCGCGCCCT GCTAGGCATA
TGGCCCGCAC TCGAGGGACA CGTACGCCTG GATGGTGCGG ACATCACGCA ATGGCGCCGT
GAAGAGCTCG GTCGCCATAT CGGTTACCTG CCACAGGATA TCGAGCTGTT CGAAGGCAGC
ATCGGCGACA ACATCGCTCG CCTGGGCGAA CTGGATGCCC AGGCGGTAGT CGAGGCAGCG
CAGTTGGCGG GGATCCACGA GCTCATCCTG CAGCTACCGC AGGGCTATGA CACCAGAATA
GGCGCTAATG GCGGCGGCCT GTCCGGCGGA CAACGGCAAC GTATCGCCCT CGCCCGAGCG
CTCTATGGTA ATCCCAAGGT GTTGATTCTG GACGAGCCGA ATTCGAATCT CGACGACACG
GGAGAAAAGA TGTTGGCGCT CGCGCTACAA AAAATGAAGC AGCGCGGCTG CACCATCTTC
GTTATCACCC ACCGCACTAA CGTGCTAGCT CAGCTTGATA GCCTGATCGT GATGAACGCC
GGCGAAATGG CGCTCTGCGG TCCGCGCGAT CAAGTGCTCC AGCAATTGCA AGGCAGTTCC
CCGACTGTCA CCGCCAAACC ACTGGTTGCC GAGTCTTAA
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| Protein sequence | MLRLSQTDLE RTLIACRASF FSVALFSFFV NLLMLVPSFY MLQVYDRAVS SGSETTLLML
TLIMLFLMIT LGLLEWVRSR IMVRISTRLE HELGARLYNA SFKLALNSGG VHASTQPLSD
LNGLRQFLTG NGLFAFFDAP WLPIYLAVMF VFHPWFGWLG LISAVLLLAL AMLNERLTQA
PLQQANREQG LATGLTSKSL NNAEVIAAMG MLPSLRQRWL SQVHKVLMLQ SQASDRSGAI
TSLSKTFRQL VQSLILGLGA YLAINHEISA GLMIAGSILL GRALAPIDQM IGAWKGFIGA
RSQYANLHAL LAKVAQDPTP MRLPSPIGSI RVENLKAGAP TSSKPIIRNI SFQVTPGTAV
GIVGASGSGK STLARALLGI WPALEGHVRL DGADITQWRR EELGRHIGYL PQDIELFEGS
IGDNIARLGE LDAQAVVEAA QLAGIHELIL QLPQGYDTRI GANGGGLSGG QRQRIALARA
LYGNPKVLIL DEPNSNLDDT GEKMLALALQ KMKQRGCTIF VITHRTNVLA QLDSLIVMNA
GEMALCGPRD QVLQQLQGSS PTVTAKPLVA ES
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