| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0719 |
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| Symbol | |
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| ID | 5109049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 799849 |
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| End bp | 801165 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640501932 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001186219 |
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| Protein GI | 146305754 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAG TCGTGAACCA GCCTTCCCCC GCCCTACTAC CTCTGGACGA CAGGCCGATC
CGACGCCTGG GCTATTGCAT CCTCGTCGTA ACCTTCGGCC TGTTTGGCGG TTGGGCCACT
CTGGCGCCAC TGGATGGTGC CGTTCTTGCA CCAGCTGTGG TGACAGTCAA GAGTTACCGC
AAGACCGTTC AGCATCTCGA GGGAGGTATA GTCCGAGCCC TGAACGTACG CGACGGGGAT
CTCGTTGAAG CCGGCGAAAT CCTTCTGGAG CTCGACGACA CTCAACTGCG CGCAGAATTT
GAGATGGTTC GCAGCCAGTT GATCGCGCTA CTGGCTCAGG AATCAAGACT AAGGGCAGAG
CAAACGGATC ATAACGGCGC GCTACCAGTA CCCGATTTCG CTCCGGACGA CCCTCGCAGC
CAAGAAGCGA TGGCCAACGA AGAGCAAATA TTTCAGACCC GCCGCCATAG CCTGGCCGGC
GAAGTTAGCA TTCGGGAAAA AACCATAGTG CAACTGGAGA CGCAAATTGC AGGCCTCGAA
GCCATGGTAT CCAGCAAACA GGAGTTGGCC CGATCCTATA CGGACGAAAT TGCCGATTTG
CGTACCCTGC TCGCCGAGGG TTTCATCGAC GTCCAACGTC TGCGCGATCA AGAACGGCTA
CTTACCCGCC TGCGTAGTGA AATTGCCGAA CATCAGTCGG CCATCGCTCA GGCACGCCTG
CGAATAAGCG AAGCCGGACT GCAGATCTTG CAGTTGAACA AGGCGTTTGC CAGCGAAGTG
GCTAGCCAAC TCGGCGACAC TCACAATCGG GTACGGGAAT TGCGCGAGCG GCTCTTAGCA
ACCCAGAGTC GCCTGGAAAG AACGCAACTC AGAGCGCCCG AATCGGGCAT GGTGATAGGC
CTTGCCATAC ACACGATCGG CGGTGTCATC GGCGCCGGCA CGCCATTACT GGACATAGTA
CCCGCGGGCG CAGAGTTGAT CGTCGAGGCC CATATAGCGC CCACGGATAT TGACCGCCTT
GCTATTGGCC GCACAGCGGA CATCCGATTC AGCGCATTCA AGAACAGCAC CACACCAGTA
ATCGAAGGCC TGCTAACCCA CCTTTCCGCG GACCGCCTGA TCGACACCGC AAGTGGCACG
CCATATTACC TCGGGCGCCT TGAGCTAACC GAGAACGGTA GAGCATCGCT CGGCGCGCTG
ACGCTTTTAC CGGGTATGCC GGCAGAAGTG CTGATCAACA CCGGAGAGCG GACGCTTCTC
AACTATCTGA TGCAACCCGC CGGCGACGCT TTGGCCCGCT CATTGATCGA GGAATGA
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| Protein sequence | MEKVVNQPSP ALLPLDDRPI RRLGYCILVV TFGLFGGWAT LAPLDGAVLA PAVVTVKSYR
KTVQHLEGGI VRALNVRDGD LVEAGEILLE LDDTQLRAEF EMVRSQLIAL LAQESRLRAE
QTDHNGALPV PDFAPDDPRS QEAMANEEQI FQTRRHSLAG EVSIREKTIV QLETQIAGLE
AMVSSKQELA RSYTDEIADL RTLLAEGFID VQRLRDQERL LTRLRSEIAE HQSAIAQARL
RISEAGLQIL QLNKAFASEV ASQLGDTHNR VRELRERLLA TQSRLERTQL RAPESGMVIG
LAIHTIGGVI GAGTPLLDIV PAGAELIVEA HIAPTDIDRL AIGRTADIRF SAFKNSTTPV
IEGLLTHLSA DRLIDTASGT PYYLGRLELT ENGRASLGAL TLLPGMPAEV LINTGERTLL
NYLMQPAGDA LARSLIEE
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