Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0719 |
Symbol | |
ID | 5109049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 799849 |
End bp | 801165 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640501932 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001186219 |
Protein GI | 146305754 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAAG TCGTGAACCA GCCTTCCCCC GCCCTACTAC CTCTGGACGA CAGGCCGATC CGACGCCTGG GCTATTGCAT CCTCGTCGTA ACCTTCGGCC TGTTTGGCGG TTGGGCCACT CTGGCGCCAC TGGATGGTGC CGTTCTTGCA CCAGCTGTGG TGACAGTCAA GAGTTACCGC AAGACCGTTC AGCATCTCGA GGGAGGTATA GTCCGAGCCC TGAACGTACG CGACGGGGAT CTCGTTGAAG CCGGCGAAAT CCTTCTGGAG CTCGACGACA CTCAACTGCG CGCAGAATTT GAGATGGTTC GCAGCCAGTT GATCGCGCTA CTGGCTCAGG AATCAAGACT AAGGGCAGAG CAAACGGATC ATAACGGCGC GCTACCAGTA CCCGATTTCG CTCCGGACGA CCCTCGCAGC CAAGAAGCGA TGGCCAACGA AGAGCAAATA TTTCAGACCC GCCGCCATAG CCTGGCCGGC GAAGTTAGCA TTCGGGAAAA AACCATAGTG CAACTGGAGA CGCAAATTGC AGGCCTCGAA GCCATGGTAT CCAGCAAACA GGAGTTGGCC CGATCCTATA CGGACGAAAT TGCCGATTTG CGTACCCTGC TCGCCGAGGG TTTCATCGAC GTCCAACGTC TGCGCGATCA AGAACGGCTA CTTACCCGCC TGCGTAGTGA AATTGCCGAA CATCAGTCGG CCATCGCTCA GGCACGCCTG CGAATAAGCG AAGCCGGACT GCAGATCTTG CAGTTGAACA AGGCGTTTGC CAGCGAAGTG GCTAGCCAAC TCGGCGACAC TCACAATCGG GTACGGGAAT TGCGCGAGCG GCTCTTAGCA ACCCAGAGTC GCCTGGAAAG AACGCAACTC AGAGCGCCCG AATCGGGCAT GGTGATAGGC CTTGCCATAC ACACGATCGG CGGTGTCATC GGCGCCGGCA CGCCATTACT GGACATAGTA CCCGCGGGCG CAGAGTTGAT CGTCGAGGCC CATATAGCGC CCACGGATAT TGACCGCCTT GCTATTGGCC GCACAGCGGA CATCCGATTC AGCGCATTCA AGAACAGCAC CACACCAGTA ATCGAAGGCC TGCTAACCCA CCTTTCCGCG GACCGCCTGA TCGACACCGC AAGTGGCACG CCATATTACC TCGGGCGCCT TGAGCTAACC GAGAACGGTA GAGCATCGCT CGGCGCGCTG ACGCTTTTAC CGGGTATGCC GGCAGAAGTG CTGATCAACA CCGGAGAGCG GACGCTTCTC AACTATCTGA TGCAACCCGC CGGCGACGCT TTGGCCCGCT CATTGATCGA GGAATGA
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Protein sequence | MEKVVNQPSP ALLPLDDRPI RRLGYCILVV TFGLFGGWAT LAPLDGAVLA PAVVTVKSYR KTVQHLEGGI VRALNVRDGD LVEAGEILLE LDDTQLRAEF EMVRSQLIAL LAQESRLRAE QTDHNGALPV PDFAPDDPRS QEAMANEEQI FQTRRHSLAG EVSIREKTIV QLETQIAGLE AMVSSKQELA RSYTDEIADL RTLLAEGFID VQRLRDQERL LTRLRSEIAE HQSAIAQARL RISEAGLQIL QLNKAFASEV ASQLGDTHNR VRELRERLLA TQSRLERTQL RAPESGMVIG LAIHTIGGVI GAGTPLLDIV PAGAELIVEA HIAPTDIDRL AIGRTADIRF SAFKNSTTPV IEGLLTHLSA DRLIDTASGT PYYLGRLELT ENGRASLGAL TLLPGMPAEV LINTGERTLL NYLMQPAGDA LARSLIEE
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