| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0703 |
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| Symbol | |
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| ID | 5109033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 775491 |
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| End bp | 779120 |
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| Gene Length | 3630 bp |
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| Protein Length | 1209 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501916 |
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| Product | urea amidolyase related protein |
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| Protein accession | YP_001186203 |
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| Protein GI | 146305738 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCATA CCGTCCTGAT CGCCAACCGT GGCGAGATCG CAGTCAGAGC CATCCGTACA
CTCAAGCGCC TGGGTGTGAA AAGCGTGGCC GTCTACTCCG ACGCCGACCG CAATGCCCAG
CACGTACGCG ACGCCGATAT CGCCATCGCC CTGGGCGGCG ACAAGCCGGC CGACAGCTAC
CTGCGTATCG ACAAGATTCT CGCCGCCGCG CAGGAAACCG GCGCCCAGGC GATCTACCCC
GGTTACGGCT TTCTCTCGGA GAGTGCCGAG TTCGCCGATG CCTGCGAAGC CGCCGGCATC
GCCTTCGTCG GCCCTACGCC TGCGCAGATT CGCGAGTTCG GCCTCAAGCA CCGCGCCCGC
GAACTGGCCG CCCAGGCCCA GGTGCCGATG GCGCCGGGCA CCGGCCTGCT GCAGAGCCTG
GCAGAAGCAC TGAGCGCCGC CGACAGCATC GGGTACCCGG TGATGCTCAA GACCACCGCC
GGCGGTGGCG GCATCGGCCT GACCCGCTGC AGCGACGCCG CCGCGCTGGC CAGCGCCTAC
GACAGCGTCA AGCGCATGGG CGAGCAGTTC TTCAGCGATG CCGGGGTGTT TCTCGAGCGC
TTCGTCGATC AGGCGCGCCA CGTCGAAGTA CAGATTTTCG GCGACGGTAC CGGCCGCGTC
GCCGCCCTCG GCGAACGCGA CTGCTCGCTG CAGCGGCGCA ACCAGAAGGT GGTCGAAGAA
ACCCCGGCAC CCAATCTGCC GCAGGCCACC CGCGAGCGCC TGCACGCCGC CGCCGTGCAA
CTGGGCGAGT CGGTGCAATA TCGCAGCGCC GGCACCGTGG AGTTCATCTA TGACGCCGCC
CGTGACGACT TCTACTTCCT CGAAGTGAAC ACCCGGCTGC AGGTCGAGCA CCCGGTCACC
GAGATGGTCA CCGGCCTGGA TCTGATCGAA TGCATGCTGC GCGTGGCCGC AGGCGATGCG
CTGGACTGGG CCGCGCTGAA CCGCGCCCCG CAGGGCGCCG CCATCGAAGT GCGGATCTAC
GCCGAAGACC CGCTGAAGAA CTTCCAGCCC AGCCCGGGCG TACTCACCGA CGTGCACTTC
CCCGCCGACG TGCGCGTCGA CGGCTGGGTC AGCACCGGCA GCGAGGTCTC GGCCTTCTAT
GACCCGATGA TCGCCAAGCT GATCGTGCAT GCGGGCACTC GCGCTGAGGC CATCGCCAAG
CTGCAGAAAG CCCTGGGCGC AACCCGCCTG CACGGCATCG CCAGCAACCT CGATTACCTG
CGCCAGGTGG TGGCCGACCA ACGCTTCGCC AAAGGCGAAG TGTGGACACG TCTGCTCGAC
AGCTTCGCCT TCAAGGCCAG CGTCATCGAA GTGCTGGAGC CCGGCACCTA CTCCAGCGTG
CAGGACTATC CGGGCCGTCT CGGCTACTGG GATATCGGCG TGCCGCCGTC CGGGCCGATG
GACGACTTCG CCTTCCGCCT GGCCAACCGC ATCGTCGGCA ACCATGCCGA GGCCGCCGGC
CTGGAATTCA CCCTGCAAGG CCCGACCCTG TGCTTTCACA GCGATGCGCT GATCGCCCTG
ACCGGCGCCG ACTGCCCGGC CACCCTGGAC GATGCGCCGG TGGCCTACTG GCAGCCGGTC
GCGGTCAAGG CCGGTCAGCT GCTCAAGCTG GGCCGGGCGG TCAGCGGCTG CCGCACCTAT
CTCGCAGTGC GCAACGGCTT GGACGTGCCG CTGTACCTGG GCAGCCGCTC CACCTTCGCC
CTCGGCCAGT TCGGCGGGCA TGCCGGGCGC ACCCTGCGCA CCGCCGATAT GCTGGCCATC
TCCCAGCCCG AGTTGCCGGC CTGCACCACG CCAGCGCCAG TCGCCCCGCC GCAGGCGGCT
CACCCGAGCC TGATCCCCAG CTATGGCACC ACCTGGAACA TCGGCGTGCT CTATGGCCCG
CACGGTGCGC CGGACTTCTT CACCGCTGAA GCCATCGAGG AATTCTTCGC CGCCGAGTGG
GAGGTGCACT ACAACTCCAA CCGCCTCGGC GTGCGTCTGA GCGGCCCGAA ACCGAGCTGG
GCGCGGGCCG ACGGCGGTGA GGCCGGCCTG CACCCGTCCA ATGTGCACGA CTGCGAATAC
GCCATCGGTT CGATCAACTT CACCGGCGAC TTCCCGGTGA TCCTGACCAA GGACGGCCCC
AGCCTCGGCG GTTTCGTCTG CCCGGTGACC ATCGCCAAGG CCGAGCTGTG GAAGGTCGGC
CAGGTCAAGC CCGGCGACAA GCTGCGCTTT CACCCCATCG GCTTCCAGCA GGCGCAGAGT
CTGGAGCAGG CGCAACTGGG CAGCATCGAA GCCCTGGCCG CGATCAGCGC GGTGACCCTG
CCGGCGCCGT CGCTGCAACC GGACGCCACG GTTTCCGCCA CGGTGCTGGC CGAGCTGCCG
GCCGAGGGCA GCCGCCCGCG TGCGGTGTAT CGCCAGGCGG GCGATGCCTA CATCCTGCTG
GAGTACGGCG ACAACGTGCT GGATCTGGCC CTGCGTCTGC GCGTGCACCT GCTGATGGAG
GCGCTCAAGG CCGAGCCGCT GCGTGGCCTG GAAGAGCTCG CCCCCGGCGT TCGCTCGCTG
CAGCTGCGCT ACGACAGCCG CGTGCTGCAC CAGCGCACCC TGCTCGAACA CCTGCTGCGT
CTGGAGGAAA ACCTTGGCGA TGTGGCCAAC CTCAAGGTGC CGACCCGTAT CGTCCACCTG
CCCATGGCCT TCGAGGACAG CGCCACCCTG GCCGCCGTCG AGCGCTACCG CGAAACCGTG
CGCAGCGAGG CCCCCTGGCT GCCGAACAAC GTCGACTTCA TCCAGCGCGC CAATGGTCTG
GCCAGCCGCG AAGAAGTGCG CGACATCCTG TTCGATGCCA GCTACCTGAT CCTCGGCCTC
GGCGACGTCT ACCTCGATGC CCCCTGCGCA GTGCCGCTGG ACCCGCGCCA TCGCCTGCTC
AGCTCCAAGT ACAACCCGGC GCGCACCTTT ACCGCCGAAG GCACCGTGGG CATCGGCGGC
ATGTACATGT GCATCTACGG CATGGACTCG CCCGGCGGCT ACCAGCTGGT GGGCCGCACC
CTGCCGATCT GGAACAAGTA CGTGAAGAAC GCCCAGTTCG AAAACGGCCA GCCCTGGCTG
CTGCGCTTCT TCGATCAGGT GCGCTTCTAC CCGGTTAGCG AGGCCGAGTT GGATGCATTC
CGTGAAGCCT TCCGCGAGGG TCGCGCGCAG ATCCGCATCG AGCAGACCGA ATTCGACTTC
GCCGCCTACA ACCGCTTCAT CGCCGACAAC GCGGCCGATA TCGCAGCCTT CCAGCGCCAG
CAGAAAGCCG CCTTTGATGC CGAGGTCGAA CTGTGGAAGG ACGACGATCC GAGCGCCGCA
CAAGCGCTGA CCAGCACGAG CCCTGACGAC GCCGATCTGG ACGGCCATCT GGTCGCCGCC
GAGATGAGCG GCAGCGTGTG GAAGGTGCTG GTCGAGCCCG GCCAGCACGT GGAAGCCGGC
ACACCGCTGC TGGTGGTGGA GGCGATGAAG ATGGAGCTGG CGGTGACCGC GCCGGTGGCC
GGCACGGTCA AGTCGCTGCG CTGCGCCCCC GGCAAGGCGG TGACGCCGGG CGATGCCCTG
CTCCTGCTGA CCCCGAGCGA GGCGGCCTGA
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| Protein sequence | MFHTVLIANR GEIAVRAIRT LKRLGVKSVA VYSDADRNAQ HVRDADIAIA LGGDKPADSY
LRIDKILAAA QETGAQAIYP GYGFLSESAE FADACEAAGI AFVGPTPAQI REFGLKHRAR
ELAAQAQVPM APGTGLLQSL AEALSAADSI GYPVMLKTTA GGGGIGLTRC SDAAALASAY
DSVKRMGEQF FSDAGVFLER FVDQARHVEV QIFGDGTGRV AALGERDCSL QRRNQKVVEE
TPAPNLPQAT RERLHAAAVQ LGESVQYRSA GTVEFIYDAA RDDFYFLEVN TRLQVEHPVT
EMVTGLDLIE CMLRVAAGDA LDWAALNRAP QGAAIEVRIY AEDPLKNFQP SPGVLTDVHF
PADVRVDGWV STGSEVSAFY DPMIAKLIVH AGTRAEAIAK LQKALGATRL HGIASNLDYL
RQVVADQRFA KGEVWTRLLD SFAFKASVIE VLEPGTYSSV QDYPGRLGYW DIGVPPSGPM
DDFAFRLANR IVGNHAEAAG LEFTLQGPTL CFHSDALIAL TGADCPATLD DAPVAYWQPV
AVKAGQLLKL GRAVSGCRTY LAVRNGLDVP LYLGSRSTFA LGQFGGHAGR TLRTADMLAI
SQPELPACTT PAPVAPPQAA HPSLIPSYGT TWNIGVLYGP HGAPDFFTAE AIEEFFAAEW
EVHYNSNRLG VRLSGPKPSW ARADGGEAGL HPSNVHDCEY AIGSINFTGD FPVILTKDGP
SLGGFVCPVT IAKAELWKVG QVKPGDKLRF HPIGFQQAQS LEQAQLGSIE ALAAISAVTL
PAPSLQPDAT VSATVLAELP AEGSRPRAVY RQAGDAYILL EYGDNVLDLA LRLRVHLLME
ALKAEPLRGL EELAPGVRSL QLRYDSRVLH QRTLLEHLLR LEENLGDVAN LKVPTRIVHL
PMAFEDSATL AAVERYRETV RSEAPWLPNN VDFIQRANGL ASREEVRDIL FDASYLILGL
GDVYLDAPCA VPLDPRHRLL SSKYNPARTF TAEGTVGIGG MYMCIYGMDS PGGYQLVGRT
LPIWNKYVKN AQFENGQPWL LRFFDQVRFY PVSEAELDAF REAFREGRAQ IRIEQTEFDF
AAYNRFIADN AADIAAFQRQ QKAAFDAEVE LWKDDDPSAA QALTSTSPDD ADLDGHLVAA
EMSGSVWKVL VEPGQHVEAG TPLLVVEAMK MELAVTAPVA GTVKSLRCAP GKAVTPGDAL
LLLTPSEAA
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