| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0674 |
|---|
| Symbol | |
|---|
| ID | 5109004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 747675 |
|---|
| End bp | 749000 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640501887 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_001186174 |
|---|
| Protein GI | 146305709 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.36687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACG AGCTGATCGC GCTGTTGATG TTCTCCTCGA TGATGTTGCT GCTGCTCACC
GGCAAGCGCG TGTTCGGCGC CATCGGCTTC GTCGCCGCAG CGGCAGCGCT GCTGCTGTGG
GGCGACGGTG GCTCGGAGAT GGCCTTCAGC GCGGCGATGA AACTGATGAA GTGGTACCCG
CTGCTGACCC TGCCGATGTT CGTGTTCATG GGCTACATGC TCTCCGAGTC GGGCATCGCC
GAAGACCTCT ACCGCATGTT CCACGTGTGG ATGGGCCCGC TGCCGGGGGG CCTGGCGGTG
GGCACCATCT TCCTGATGGT GGCGATCTCG GCGATGAACG GCCTGAGCGT GGCCGGCATG
GCCATCGGCG CCAGCATCGC CTTGCCCGAG CTGCTCAGGC GTGGCTACGA CAAGATCATG
ATCACCGGGG TAATCCAGGC CGGCAGCTCG CTGGGGATTC TGATTCCGCC CAGCGTGGTG
CTGGTGCTCT ACGGCATGAT CGCGCGCCAG CCGGTGGGCC AGCTGTGGCT GGCCGGGGCC
ATTCCCGGGC TGATGATGGC CGGCATGTTC ATGCTCTATA TCGCCATTCG CTGCCGCCTG
CAGCCGCACA TGGGCCCGCC GCTGGCCAAG GCCGAGCGCG AGCAGATCTC CTGGAGCGAG
AAGCTGCGCC TGCTCAGCGC CGGGCTGGTG CCGCTGTTCA TCTTCTTCTC CATGACCGGC
TTGTTCCTGC TGGGCTACAC CAGCCTGGTG GAAAGCTCGG CGGTGGGCGC CTGCGCAGCC
ACCCTGGCGG CGCTGTTCAA GGGCCGGCTG AACGGCAAGG TGATGGAGGA AACGTTGCGC
AAGACGCTGG CCATCAGCTG CATGTTCATG TGGATCATCC TCGCCGCGTT GTGCTTCGGC
GCGGTGTTCG ACGGCCTCGG TGCGGTCAGG GCGATCGAGC AGTTCTTCGT CGACAGCCTG
CACCTGGGGC CCTGGCAGAT CCTGATCATC ATGCAGCTGT CGTTCATCCT GATGGGCATG
TTCCTCGACG ACACCGCCAT GCTGGTCATC GTCGCGCCGC TCTACGTGCC GCTGGTGGGG
GCGCTGGGCT TCGACCTGAT CTGGTACGGC GTGCTCTACA CCATCACCTG CCAGATCGCC
TACATGACCC CGCCGTTCGG CTACAACCTG TTCCTCATGC GCGCCATGGC CCCGCCCGAG
GTGAGCCTGC GCGACATCTA CGTCTCGGTC ACCCCCTTCG TGCTGATCAT GGCGCTGGCC
CTGGTGCTGG TGATGGCCTT CCCGCAGCTG GCGCTGTGGC TGCCGCAACT GCACTACGGC
GGTTGA
|
|---|
| Protein sequence | MSYELIALLM FSSMMLLLLT GKRVFGAIGF VAAAAALLLW GDGGSEMAFS AAMKLMKWYP
LLTLPMFVFM GYMLSESGIA EDLYRMFHVW MGPLPGGLAV GTIFLMVAIS AMNGLSVAGM
AIGASIALPE LLRRGYDKIM ITGVIQAGSS LGILIPPSVV LVLYGMIARQ PVGQLWLAGA
IPGLMMAGMF MLYIAIRCRL QPHMGPPLAK AEREQISWSE KLRLLSAGLV PLFIFFSMTG
LFLLGYTSLV ESSAVGACAA TLAALFKGRL NGKVMEETLR KTLAISCMFM WIILAALCFG
AVFDGLGAVR AIEQFFVDSL HLGPWQILII MQLSFILMGM FLDDTAMLVI VAPLYVPLVG
ALGFDLIWYG VLYTITCQIA YMTPPFGYNL FLMRAMAPPE VSLRDIYVSV TPFVLIMALA
LVLVMAFPQL ALWLPQLHYG G
|
|---|
| |