| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0651 |
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| Symbol | |
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| ID | 5108981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 719994 |
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| End bp | 721877 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640501864 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001186151 |
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| Protein GI | 146305686 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.605256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000117316 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTCTTGT TCCTGACCTG CTGCTGCAGT TGGGTCTTTG CCGCCTCCAT AACACTGCGT
GCAGACAGCA GCGGTATGCT GCTGAACCAC AGCGTAGAGC TTCTGGAAGA CGTAGGCGGC
AGGCTGCAAA TCGGCGACAT GGCCGACCCT GCTGTGCAGG CTCTCTTCAA GCCGGCCGCA
GGCCGCGCCA CCGTTGGCCA GAGCCGTCAC CCCTGGTGGA TCAAGGTCAC CCTGCAACGC
GGCAGCGATG CGCCCGCGCA GTGGTGGCTG GAGAATGCAG GGATCACGAT TTATCGCCTG
CATCTCTACC TCCCTGATGA GCAGGGTGGC TGGGTAGAGC GCCCAACCGG CACCGCGGTG
CCCTATGCAC AAGGTCGCGA CCATCCGTAC CGGCGCATGC TGTTCAAGCT GCCGGAGCTG
ACCGAGCAAC CACTGACGCT CTACTTCCGC AGCCTTGACC CGGCGGGCAA TTCATTTCCG
CTCAAGGTTT GGCAACTTGC CGATCTGCAA CAGCTGGCAA GCCACGAGAA TCTGGGCTAC
GGCCTGATCT ACGGCGTCAT CTTTGCGCTG TTGCTGTACA ACCTGTTCAT CCTGATCGCA
CTGCGCGACA AAGCCTACCT GTGGTACGTC CTAGCCACCG GCAGCGTGCT GGTGTTCATC
CTCAGCATGA CCGGCCACGG CTTTCAGTAC CTCTGGCCCG GCAGTCCAGT ACCTTTCTGG
CTGGATCGCA TTACCCTGCC ATCGCTGTGG GGGATCTTCG TCATGCGCTT CACCCAGGAG
CTGCTGTTCA CCCGGCACGG CCTGATCTGG CCACATCGCC TGCTCAACGC CGGCTGCATC
CTGTACGTGA TCGCCATCGT CATCAACGCC CTAGGCCATC GCGCCGAAGG CGCCATGATC
ATTGCACTGA CGCCTATCGT TACCGTCCCT TCTGCACTGT TCAGCGCCAT TGTTCGCGTG
CGCCAGGGCT TCTTCCCGGC CCGCTTCTAT CTGCTCGGCT ACGGCGCGGT ACTCGCCAGT
ACGCTGGTTC TGGTAATGCG GGCTGCTGGC CTGATCGAAC CGAACAACTT CACCGCCTAC
CTATTCCCTA TCTCGGTCGC GGCAGAAACC ATTCTGTTTT CGTTCGCCCT CGCCTATCGC
ATTCAAATGC TAAAACAGGA AAAGGCGGAA GCCTTGCTCC AGGCTGATCG AGAGAAAACG
GCACGTCTTG CCCAGATTCA GGCCAGCGCC GACGAACTGC AGGCAGCGGT CAACTTACGC
ACCGCCGAAC TGGCGGCCGC GAACGAGCGC CTGTGCCAGC GCGAACGCGA ACTGGAGCAT
GCGGCCTTCA ATGACCCGCT TACCGAGCTG CCCAACCGGC GCTATCTGGT CGAGCGCTGC
GAATCGGCCC TGGCGCATGC CGAACGCCAC GGCGAGAGCG TGGCGCTGCT GCTGATCGAT
CTGGATCATT TCAAACCGAT CAACGACCGC TTTGGCCACG CCGCTGGCGA CATGATGCTG
CAGGTCATCG CCAAGCGCCT GCGCGAGCAC GTGCGCGCTG GCGATGCGGT TGCGCGCCTG
GGCGGCGACG AGTTCGCCGC CCTGATTGGC GGCAGCGATG CCGAAACCCA GGCCCGCGAG
ATCGCCGCGC GCCTGCTGGC CGAGCTGTCC GAACCGGTGC ACTACGGCGC CGAGCGCCTG
CGCGTGACCA TCAGCATCGG TGCAGCGCTC TATCCGCGCC ATGCCAAAAA CTTCACCGGG
CTGTACAAGG CCGCCGATCA GGCGCTGTAC CGGGTCAAGG AGCTGGGTCG CTCCGGCTCG
CGGGTGCATG GCGAGGACGG CGAGCTGAGC GAGCAGGCCT GCCTGCAGCT CGATGTACTG
AAGGTACCCA GCGGGCTGGC GTGA
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| Protein sequence | MVLFLTCCCS WVFAASITLR ADSSGMLLNH SVELLEDVGG RLQIGDMADP AVQALFKPAA
GRATVGQSRH PWWIKVTLQR GSDAPAQWWL ENAGITIYRL HLYLPDEQGG WVERPTGTAV
PYAQGRDHPY RRMLFKLPEL TEQPLTLYFR SLDPAGNSFP LKVWQLADLQ QLASHENLGY
GLIYGVIFAL LLYNLFILIA LRDKAYLWYV LATGSVLVFI LSMTGHGFQY LWPGSPVPFW
LDRITLPSLW GIFVMRFTQE LLFTRHGLIW PHRLLNAGCI LYVIAIVINA LGHRAEGAMI
IALTPIVTVP SALFSAIVRV RQGFFPARFY LLGYGAVLAS TLVLVMRAAG LIEPNNFTAY
LFPISVAAET ILFSFALAYR IQMLKQEKAE ALLQADREKT ARLAQIQASA DELQAAVNLR
TAELAAANER LCQRERELEH AAFNDPLTEL PNRRYLVERC ESALAHAERH GESVALLLID
LDHFKPINDR FGHAAGDMML QVIAKRLREH VRAGDAVARL GGDEFAALIG GSDAETQARE
IAARLLAELS EPVHYGAERL RVTISIGAAL YPRHAKNFTG LYKAADQALY RVKELGRSGS
RVHGEDGELS EQACLQLDVL KVPSGLA
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