| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0635 |
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| Symbol | hfq |
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| ID | 5109597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 702481 |
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| End bp | 702741 |
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| Gene Length | 261 bp |
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| Protein Length | 86 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640501846 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001186135 |
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| Protein GI | 146305670 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.0651031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACCTGAATA CCCTGCGTAA GGAACGCGTC
CCTGTTTCCA TCTATCTGGT CAACGGCATC AAGCTGCAGG GCCAGATCGA GTCCTTCGAC
CAGTTCGTCA TCCTGCTGAA GAACACTGTC AGCCAGATGG TCTACAAACA CGCCATTTCC
ACCGTCGTGC CCAGCCGTCC GGTGCGCCTG CCGAGCGCTG GCGACTCCGA GCAGGCCGAT
GCCGAGCCGG GTAACGCCTG A
|
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| Protein sequence | MSKGHSLQDP YLNTLRKERV PVSIYLVNGI KLQGQIESFD QFVILLKNTV SQMVYKHAIS
TVVPSRPVRL PSAGDSEQAD AEPGNA
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