| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0630 |
|---|
| Symbol | |
|---|
| ID | 5109592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 696133 |
|---|
| End bp | 697632 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640501841 |
|---|
| Product | carbohydrate kinase, YjeF related protein |
|---|
| Protein accession | YP_001186130 |
|---|
| Protein GI | 146305665 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.522163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCAC TTTCCGCCTC CTTGCCCCTG AGCCTGCACG GCGCCGCGCA GGTGCGTGCG
CTGGATGCCG CGCTGATCGC TGCCGGCACC CCCGGCTACG AACTGATGCA GCGCGCCGCC
CATGCCGCCT GGCGCGTGCT GCGCAGGCGC TGGCCGGATG CTGGCGAGAT CACCGTGCTG
GCCGGGCGCG GCAACAATGC CGGTGACGGC TATCTGATCG CGGCGCTGGC TCAACGCGCC
GGCTGGCGGG TGCGGGTACT GGCGGTGGGC GAGCCGGCGG CGCTGAGTGG CGATGCGGCG
CAGGCCTGTG CCGAGGCGCG CAGCGCCGGA GTCGACGTGC GACCCTGGAG CGAATGTGCG
CCGCTGGCCG GCGTGCTGGT CGATGCGCTG CTCGGCACCG GACTGGCCGG CGCCGTGCGC
GAGCCTTATG CCCAGGCCAT CCGCATGATC AATCAGAGCG GTCTGCCGGT GCTGGCGGTG
GATATCCCCT CCGGCCTGCA GGCCGATCAT GGGGCGCGCC TTGGCTTGGC GGTGCAGGCC
GACGTGACGG TGACCTTCAT CGCGCTCAAG CTCGGCCTGT TCACCGGTCT CGGCCCTGAG
TTGTGCGGCG AGCTGCAGTT CGACGATCTA CAGGGCGACC CTCGGCTTCT GGCGCAGGCC
CCAGCCCTGG CGCAGCGCCT GGACCTGGCC AACCTGCCAC GTCTGGCGCC GCGCTCGCCG
CTAGCGCACA AGGGCCAGTT CGGCCACCTG CTGGTGGTCG GTGGCGATCT GGGCATGGGC
GGCGCGGCGC TGCTCAGTGC CGAAAGCGCG TTACGCGCTG GTGCCGGCCT GGTGTCGCTG
GCGACCCGGC CCGAGCATGT GCAGGCGGCG CTGGTGCGGC GCCCTGAGGT GATGTGTTCG
GCGCTGGCGT CGGCCAATCA GCTGCTCGGC CTGGCCGAGC GCGCCACTGT CTGCGTGGTC
GGGCCAGGGT TGGGCCAGAA TGCATGGGGC CGCAGCCTGC TTTCGGTGGC CGCGGGTCTG
CCGGTGCCTC AGGTGTGGGA TGCCGATGCG CTCAACCTGC TGGCGGCCGG TCAGGTCGGT
GCGCCGCGGC AGGGGGTGCT GACCCCGCAT CCGGGCGAGG CCGCCCGTTT GCTGGGCGTG
GCGAGTGCCG AGGTGCAGGC GGACCGGCCC GCCGCCGCGC GGGCGCTGGC CCAGCGCTTT
GGTCTGGTGG TGGTGCTTAA GGGGGCGGGC AGCCTGATCG CCGCTCCGGA CGGAAGCCTG
GCGCTCTGTG ATCGCGGCCA TCCGGCCATG GCCGGTGCCG GATTGGGGGA TGTATTGGCG
GGTCTGATCG GCGCCCTGCT GGCGCAGGGC ATGGCGGCCT TCGATGCCGC TTGCCTGGCG
GTGTGGCTGC ACGCGCATGC GGGCGAAAAT CTCGGCAGGC AGGGGCGTGG GCTGGCTGCT
GGCGATCTGC CTGACACCAT TCGTCAGTTA CTGGAGGAGT TCTGTCCTTG TCTGAGTTGA
|
|---|
| Protein sequence | MHPLSASLPL SLHGAAQVRA LDAALIAAGT PGYELMQRAA HAAWRVLRRR WPDAGEITVL
AGRGNNAGDG YLIAALAQRA GWRVRVLAVG EPAALSGDAA QACAEARSAG VDVRPWSECA
PLAGVLVDAL LGTGLAGAVR EPYAQAIRMI NQSGLPVLAV DIPSGLQADH GARLGLAVQA
DVTVTFIALK LGLFTGLGPE LCGELQFDDL QGDPRLLAQA PALAQRLDLA NLPRLAPRSP
LAHKGQFGHL LVVGGDLGMG GAALLSAESA LRAGAGLVSL ATRPEHVQAA LVRRPEVMCS
ALASANQLLG LAERATVCVV GPGLGQNAWG RSLLSVAAGL PVPQVWDADA LNLLAAGQVG
APRQGVLTPH PGEAARLLGV ASAEVQADRP AAARALAQRF GLVVVLKGAG SLIAAPDGSL
ALCDRGHPAM AGAGLGDVLA GLIGALLAQG MAAFDAACLA VWLHAHAGEN LGRQGRGLAA
GDLPDTIRQL LEEFCPCLS
|
|---|
| |