Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0594 |
Symbol | |
ID | 5109556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 652493 |
End bp | 654334 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640501805 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_001186094 |
Protein GI | 146305629 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA CCTCTGCGGA TCCTCAATCC AGCTCCAGCT TGAAGATTTA CTTTCGCTTA TTGCGCTATG TCAGACCCTA CGTCGGTTTG TTCCTGCTCA GCCTCCTCGG CTTCCTGATC TTCGCTTCCA CCCAGCCGAT GCTGGGTTAC ATCCTCAAGT ACTTCGTCGA TGGCCTGTCC AACCCTGACG CCAGCCTGTT CGCAGGCGTG CCCTGGCTGC TTGAGCATGC GCCCTGGCTG GCGCATCTCA AGCTGCTGCA GGCCGTGCCG TTGCTGATCG TGCTGATCGC CCTGTGGCAG GGCATCGGCT CCTTCCTGGG CAACTACTAC CTGGCCAAGG TTTCCATGGG GTTGGTGCAG GACCTGCGCG TGGCGCTGTT CAACAACCTG CTGACCTTGC CCAATCGCTA TTTCGACAAC CACAACTCCG GGCACCTGAT CTCGCGGATT ACCTACAACG TGACCATGGT CACCGGGGCC GCCACCGATG CAATCAAGGT GGTGGTACGT GAGGGCATGA CGGTGATCTT CCTATTTGCC ACGCTGCTGT GGATGAACTG GAAGCTGACC CTGGTGATGG TGGCGATCCT GCCGGTGATT GGTCTGATGG TGACCAGTAC CAGCAAGAAA TTCCGTAAGC AGAGCAAGAA GATCCAGACC AGCATGGGTG ACGTCACCCA TGTGACCTCG GAGAGCATCC AGGGCTATCG CGTGGTGCGC AGCTTCGGTG GCGAGGACTA CGAACGGCAG CGTTTCCTCG ATGCCAGCGA GCAGAACAAG CTCAAGCAGC TGAAGATGGT CAAGACCAAC GCCGTCTACA CCCCATCGCT GCAGCTGGTG ATCTACAGCG CCATGGCGGT GCTGATGTTC CTGGTTCTGC TGCTGCGCGG TGATGCCTCG GCCGGTGATC TGGTGGCCTA TATCACCCTG GCCGGCCTGC TGCCCAAGCC GATTCGCCAG CTCTCGGAAG TCAGTTCGAC CATCCAGAAG GGCGTGGCCG GTGCCGAGAG CATCTTCGAG CAGCTCGACG AGGAGCCGGA AGTCGACTGC GGCACCCAGG AGCGCGAGCG CATCAGCGGC CGGCTCGAGG TGCGCGATCT GAGCTTCAGC TACCCCGGAT CGGAAAAGCC GGTGCTGAAC AACATTTCCT TCGTCGCCGA GCCCGGGCAG ATGGTGGCGC TGGTCGGACG TTCCGGCAGC GGCAAGTCGA CCCTGGCCAA TCTGATTCCG CGCTTCTATC ACCATGAGCA GGGCAGCATC CTGCTCGATG GCGTGGATGT GGAGGATTAC CGCCTGCGCA ACCTGCGCCG CCACATCGCG CTGGTGACCC AGCACGTCAC CCTGTTCAAC GACACGGTGC GCAACAACAT CGCCTATGGC GATCTGGCTG GCGCGCCGCT GGAAGCGGTG CAGCAGGCGG CGCGCGATGC CTATGCCGCC GAGTTCATCG AGAAGATGCC GCAGGGCTAC GACACCCTGG TCGGCGAGAA CGGCGTGCTG CTCTCCGGCG GCCAGCGCCA ACGCCTGGCC ATTGCCCGCG CGCTGCTCAA GGATGCGCCG CTGCTGATCC TCGACGAGGC CACCTCGGCG CTCGACACCG AGTCCGAGCG GCATATCCAG GCCGCACTGG ATCAGGTGAT GCAGGGCCGC ACCACGCTGG TGATCGCGCA CCGCCTGACC ACCATCGAGA AGGCCGATCT GATTCTGGTG ATGGACCAGG GGCAGATCGT CGAGCGCGGC AGTCATGCCG AGCTGCTGGC GCAGAACGGC TATTACGCAC GCCTGCATGC CAAGCAGTTC GAGGAAGGCG GCGAGCCCGT CGTGGTCGAG CAGGACGTCT GA
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Protein sequence | MTDTSADPQS SSSLKIYFRL LRYVRPYVGL FLLSLLGFLI FASTQPMLGY ILKYFVDGLS NPDASLFAGV PWLLEHAPWL AHLKLLQAVP LLIVLIALWQ GIGSFLGNYY LAKVSMGLVQ DLRVALFNNL LTLPNRYFDN HNSGHLISRI TYNVTMVTGA ATDAIKVVVR EGMTVIFLFA TLLWMNWKLT LVMVAILPVI GLMVTSTSKK FRKQSKKIQT SMGDVTHVTS ESIQGYRVVR SFGGEDYERQ RFLDASEQNK LKQLKMVKTN AVYTPSLQLV IYSAMAVLMF LVLLLRGDAS AGDLVAYITL AGLLPKPIRQ LSEVSSTIQK GVAGAESIFE QLDEEPEVDC GTQERERISG RLEVRDLSFS YPGSEKPVLN NISFVAEPGQ MVALVGRSGS GKSTLANLIP RFYHHEQGSI LLDGVDVEDY RLRNLRRHIA LVTQHVTLFN DTVRNNIAYG DLAGAPLEAV QQAARDAYAA EFIEKMPQGY DTLVGENGVL LSGGQRQRLA IARALLKDAP LLILDEATSA LDTESERHIQ AALDQVMQGR TTLVIAHRLT TIEKADLILV MDQGQIVERG SHAELLAQNG YYARLHAKQF EEGGEPVVVE QDV
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