Gene Pmen_0594 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0594 
Symbol 
ID5109556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp652493 
End bp654334 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content62% 
IMG OID640501805 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_001186094 
Protein GI146305629 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACA CCTCTGCGGA TCCTCAATCC AGCTCCAGCT TGAAGATTTA CTTTCGCTTA 
TTGCGCTATG TCAGACCCTA CGTCGGTTTG TTCCTGCTCA GCCTCCTCGG CTTCCTGATC
TTCGCTTCCA CCCAGCCGAT GCTGGGTTAC ATCCTCAAGT ACTTCGTCGA TGGCCTGTCC
AACCCTGACG CCAGCCTGTT CGCAGGCGTG CCCTGGCTGC TTGAGCATGC GCCCTGGCTG
GCGCATCTCA AGCTGCTGCA GGCCGTGCCG TTGCTGATCG TGCTGATCGC CCTGTGGCAG
GGCATCGGCT CCTTCCTGGG CAACTACTAC CTGGCCAAGG TTTCCATGGG GTTGGTGCAG
GACCTGCGCG TGGCGCTGTT CAACAACCTG CTGACCTTGC CCAATCGCTA TTTCGACAAC
CACAACTCCG GGCACCTGAT CTCGCGGATT ACCTACAACG TGACCATGGT CACCGGGGCC
GCCACCGATG CAATCAAGGT GGTGGTACGT GAGGGCATGA CGGTGATCTT CCTATTTGCC
ACGCTGCTGT GGATGAACTG GAAGCTGACC CTGGTGATGG TGGCGATCCT GCCGGTGATT
GGTCTGATGG TGACCAGTAC CAGCAAGAAA TTCCGTAAGC AGAGCAAGAA GATCCAGACC
AGCATGGGTG ACGTCACCCA TGTGACCTCG GAGAGCATCC AGGGCTATCG CGTGGTGCGC
AGCTTCGGTG GCGAGGACTA CGAACGGCAG CGTTTCCTCG ATGCCAGCGA GCAGAACAAG
CTCAAGCAGC TGAAGATGGT CAAGACCAAC GCCGTCTACA CCCCATCGCT GCAGCTGGTG
ATCTACAGCG CCATGGCGGT GCTGATGTTC CTGGTTCTGC TGCTGCGCGG TGATGCCTCG
GCCGGTGATC TGGTGGCCTA TATCACCCTG GCCGGCCTGC TGCCCAAGCC GATTCGCCAG
CTCTCGGAAG TCAGTTCGAC CATCCAGAAG GGCGTGGCCG GTGCCGAGAG CATCTTCGAG
CAGCTCGACG AGGAGCCGGA AGTCGACTGC GGCACCCAGG AGCGCGAGCG CATCAGCGGC
CGGCTCGAGG TGCGCGATCT GAGCTTCAGC TACCCCGGAT CGGAAAAGCC GGTGCTGAAC
AACATTTCCT TCGTCGCCGA GCCCGGGCAG ATGGTGGCGC TGGTCGGACG TTCCGGCAGC
GGCAAGTCGA CCCTGGCCAA TCTGATTCCG CGCTTCTATC ACCATGAGCA GGGCAGCATC
CTGCTCGATG GCGTGGATGT GGAGGATTAC CGCCTGCGCA ACCTGCGCCG CCACATCGCG
CTGGTGACCC AGCACGTCAC CCTGTTCAAC GACACGGTGC GCAACAACAT CGCCTATGGC
GATCTGGCTG GCGCGCCGCT GGAAGCGGTG CAGCAGGCGG CGCGCGATGC CTATGCCGCC
GAGTTCATCG AGAAGATGCC GCAGGGCTAC GACACCCTGG TCGGCGAGAA CGGCGTGCTG
CTCTCCGGCG GCCAGCGCCA ACGCCTGGCC ATTGCCCGCG CGCTGCTCAA GGATGCGCCG
CTGCTGATCC TCGACGAGGC CACCTCGGCG CTCGACACCG AGTCCGAGCG GCATATCCAG
GCCGCACTGG ATCAGGTGAT GCAGGGCCGC ACCACGCTGG TGATCGCGCA CCGCCTGACC
ACCATCGAGA AGGCCGATCT GATTCTGGTG ATGGACCAGG GGCAGATCGT CGAGCGCGGC
AGTCATGCCG AGCTGCTGGC GCAGAACGGC TATTACGCAC GCCTGCATGC CAAGCAGTTC
GAGGAAGGCG GCGAGCCCGT CGTGGTCGAG CAGGACGTCT GA
 
Protein sequence
MTDTSADPQS SSSLKIYFRL LRYVRPYVGL FLLSLLGFLI FASTQPMLGY ILKYFVDGLS 
NPDASLFAGV PWLLEHAPWL AHLKLLQAVP LLIVLIALWQ GIGSFLGNYY LAKVSMGLVQ
DLRVALFNNL LTLPNRYFDN HNSGHLISRI TYNVTMVTGA ATDAIKVVVR EGMTVIFLFA
TLLWMNWKLT LVMVAILPVI GLMVTSTSKK FRKQSKKIQT SMGDVTHVTS ESIQGYRVVR
SFGGEDYERQ RFLDASEQNK LKQLKMVKTN AVYTPSLQLV IYSAMAVLMF LVLLLRGDAS
AGDLVAYITL AGLLPKPIRQ LSEVSSTIQK GVAGAESIFE QLDEEPEVDC GTQERERISG
RLEVRDLSFS YPGSEKPVLN NISFVAEPGQ MVALVGRSGS GKSTLANLIP RFYHHEQGSI
LLDGVDVEDY RLRNLRRHIA LVTQHVTLFN DTVRNNIAYG DLAGAPLEAV QQAARDAYAA
EFIEKMPQGY DTLVGENGVL LSGGQRQRLA IARALLKDAP LLILDEATSA LDTESERHIQ
AALDQVMQGR TTLVIAHRLT TIEKADLILV MDQGQIVERG SHAELLAQNG YYARLHAKQF
EEGGEPVVVE QDV