| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0580 |
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| Symbol | |
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| ID | 5109543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 638238 |
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| End bp | 639242 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501793 |
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| Product | lipopolysaccharide heptosyltransferase I |
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| Protein accession | YP_001186082 |
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| Protein GI | 146305617 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02193] lipopolysaccharide heptosyltransferase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0447499 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGGGTGC TGATCATCAA GACCTCGTCG CTGGGCGACG TGGTACATAC CCTGCCGGCA
CTGACCGATG CGGCCCGCGC CATTCCCGGC ATCCGCTTCG ACTGGGTGGT GGAGGAAGGC
TTCGCCGAGA TTCCCGCCTG GCATCCGGCC GTTTCCCAGG TGATTCCGGT GGCCATCCGC
CGCTGGCGCA AGCACCCGCT GCGCACCTGG CGCAGCGGCG AATGGGCGCG CTTCAAGCAG
CGTCTGCGCG AAACCCGTTA CGACCTGGTG ATCGATGCCC AGGGCCTGCT CAAGAGTGCC
TGGCTGACGC GCTACGTGCA GGCGCCGGTG GCCGGGCTGG ATCGCGATTC GGCGCGTGAA
CCGCTGGCCA GCCGCTTCTA TGACCGGCGC TATGCAGTGG CCAGGGATCA GCATGCCCTG
GAGCGCGTGC GCCAGTTGTT CGCCCAGGCG CTGGATTATC CACTGCCGGC CGGCAGCGGC
GACTACGGTC TGAATCGCGC GGCGATGATG GATGCCATGG CGCAGCCCTA TCTGGTGTTC
CTGCATGGCA CCACCTGGGC CAGCAAGCAC TGGCCGGAAG CCGACTGGCG CGCCCTGGCC
GAGCGCATGG ACGAGCTGGG CTGGGCCGTG CGCCTGCCCT GGGGCAACGA GACGGAGAAG
GCACGTGCCG AACGCATCGC CGCCGGCCTC ACGCATGCCG CCGTGCTGCC GAAACTGAAT
CTGGCCGGCG TAGCCAAGGT GATCGCTGGC GCCAGCGCCT GCGTTTCCGT CGACACCGGC
CTCGGTCATT TGGCTGCGGC GCTGGATGTG CCGAACATTT CCCTCTACGG TCCGACCCTG
CCCGGCAAGG TGGGCGCCTA TGGCCGTAGC CAGATTCATC TGTGCGCCAG TGGCCCGAAC
GCCGGCAGCG GTGACCGTGA CAAGCCCTGC TTCGATGGCC TCGGTGCAGA GCGCGTTGGC
CTGGAGCTGG AGGCGCTGCT GCTGGCGCCT CCCGGCACCC TTTAA
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| Protein sequence | MRVLIIKTSS LGDVVHTLPA LTDAARAIPG IRFDWVVEEG FAEIPAWHPA VSQVIPVAIR
RWRKHPLRTW RSGEWARFKQ RLRETRYDLV IDAQGLLKSA WLTRYVQAPV AGLDRDSARE
PLASRFYDRR YAVARDQHAL ERVRQLFAQA LDYPLPAGSG DYGLNRAAMM DAMAQPYLVF
LHGTTWASKH WPEADWRALA ERMDELGWAV RLPWGNETEK ARAERIAAGL THAAVLPKLN
LAGVAKVIAG ASACVSVDTG LGHLAAALDV PNISLYGPTL PGKVGAYGRS QIHLCASGPN
AGSGDRDKPC FDGLGAERVG LELEALLLAP PGTL
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