Gene Pmen_0578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0578 
Symbol 
ID5109541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp636209 
End bp637132 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content64% 
IMG OID640501791 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_001186080 
Protein GI146305615 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0382856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATGT CCGACCGTGA TGGCGTGATC TGGTACGACG GCGAGCTGGT GCCGTGGCGC 
GAAGCCAACA CCCATGTGCT GACCCACACC CTGCATTACG GCATGGGCGT GTTCGAGGGC
GTGCGCGCCT ACAACACCCC GGACGGCACC GCCATCTTCC GCCTGCAGGC GCACACCGAC
CGCCTGTTCG ATTCGGCGCA TATCTTCAAC ATGCAGATCC CCTTCTCCAA GGAAGAGATC
AACGAAGCGC AGCGCACCGC GGTGCGCGAG AACGGCCTGG AAAGCGCCTA TCTGCGTCCA
ATGGTGTTCT TCGGCAGCGA GGGCATGGGC CTGCGCGCCT CGGGTCTCAA GGTGCACGTG
ATCGTCGCCG CCTGGCACTG GGGCGCCTAC ATGGGCGAGG AAGCGTTGGT CAGCGGCATC
AAGGTGCGCA CCAGTTCCTA CACCCGTCAC CACGTCAACA TCTCCATGAC CCGCGCCAAG
GCCAACGGCA ACTACATCAA CTCGATGCTG GCCCTGCAGG AAGCCATCTC CGGCGGCGCC
GACGAGGCCA TGCTGCTGGA CCCGGAGGGC TACGTGGCCG AGGGTTCGGG CGAGAACATC
TTCCTGGTCA AGGACGGTGT GGTGTACACC CCGGAAGTGA CCTCCTGCCT CAACGGCATC
ACCCGCAGCA CCATCCTGAC CCTGGCTGCC GAGCATGGCA TCAAGGTGGT GGAGAAGCGC
ATCACCCGCG ACGAGGTGTA CATCGCCGAC GAAGCCTTCT TTACCGGTAC CGCCGCCGAG
GTCACGCCGA TCCGCGAAGT GGATGGTCGT CAGATCGGCA TCGGCCGCCG CGGCCCGGTC
ACCGAGAAGC TGCAGAAAGC CTACTTCGAC CTGGTCACCG GCAAGACCAG CGCCCACGCC
GAGTGGCGTA CGCTGGTCAA GTAA
 
Protein sequence
MSMSDRDGVI WYDGELVPWR EANTHVLTHT LHYGMGVFEG VRAYNTPDGT AIFRLQAHTD 
RLFDSAHIFN MQIPFSKEEI NEAQRTAVRE NGLESAYLRP MVFFGSEGMG LRASGLKVHV
IVAAWHWGAY MGEEALVSGI KVRTSSYTRH HVNISMTRAK ANGNYINSML ALQEAISGGA
DEAMLLDPEG YVAEGSGENI FLVKDGVVYT PEVTSCLNGI TRSTILTLAA EHGIKVVEKR
ITRDEVYIAD EAFFTGTAAE VTPIREVDGR QIGIGRRGPV TEKLQKAYFD LVTGKTSAHA
EWRTLVK