Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0578 |
Symbol | |
ID | 5109541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 636209 |
End bp | 637132 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640501791 |
Product | branched-chain amino acid aminotransferase |
Protein accession | YP_001186080 |
Protein GI | 146305615 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0382856 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATGT CCGACCGTGA TGGCGTGATC TGGTACGACG GCGAGCTGGT GCCGTGGCGC GAAGCCAACA CCCATGTGCT GACCCACACC CTGCATTACG GCATGGGCGT GTTCGAGGGC GTGCGCGCCT ACAACACCCC GGACGGCACC GCCATCTTCC GCCTGCAGGC GCACACCGAC CGCCTGTTCG ATTCGGCGCA TATCTTCAAC ATGCAGATCC CCTTCTCCAA GGAAGAGATC AACGAAGCGC AGCGCACCGC GGTGCGCGAG AACGGCCTGG AAAGCGCCTA TCTGCGTCCA ATGGTGTTCT TCGGCAGCGA GGGCATGGGC CTGCGCGCCT CGGGTCTCAA GGTGCACGTG ATCGTCGCCG CCTGGCACTG GGGCGCCTAC ATGGGCGAGG AAGCGTTGGT CAGCGGCATC AAGGTGCGCA CCAGTTCCTA CACCCGTCAC CACGTCAACA TCTCCATGAC CCGCGCCAAG GCCAACGGCA ACTACATCAA CTCGATGCTG GCCCTGCAGG AAGCCATCTC CGGCGGCGCC GACGAGGCCA TGCTGCTGGA CCCGGAGGGC TACGTGGCCG AGGGTTCGGG CGAGAACATC TTCCTGGTCA AGGACGGTGT GGTGTACACC CCGGAAGTGA CCTCCTGCCT CAACGGCATC ACCCGCAGCA CCATCCTGAC CCTGGCTGCC GAGCATGGCA TCAAGGTGGT GGAGAAGCGC ATCACCCGCG ACGAGGTGTA CATCGCCGAC GAAGCCTTCT TTACCGGTAC CGCCGCCGAG GTCACGCCGA TCCGCGAAGT GGATGGTCGT CAGATCGGCA TCGGCCGCCG CGGCCCGGTC ACCGAGAAGC TGCAGAAAGC CTACTTCGAC CTGGTCACCG GCAAGACCAG CGCCCACGCC GAGTGGCGTA CGCTGGTCAA GTAA
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Protein sequence | MSMSDRDGVI WYDGELVPWR EANTHVLTHT LHYGMGVFEG VRAYNTPDGT AIFRLQAHTD RLFDSAHIFN MQIPFSKEEI NEAQRTAVRE NGLESAYLRP MVFFGSEGMG LRASGLKVHV IVAAWHWGAY MGEEALVSGI KVRTSSYTRH HVNISMTRAK ANGNYINSML ALQEAISGGA DEAMLLDPEG YVAEGSGENI FLVKDGVVYT PEVTSCLNGI TRSTILTLAA EHGIKVVEKR ITRDEVYIAD EAFFTGTAAE VTPIREVDGR QIGIGRRGPV TEKLQKAYFD LVTGKTSAHA EWRTLVK
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