| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0575 |
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| Symbol | aceF |
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| ID | 5109538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 628304 |
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| End bp | 630274 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501788 |
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| Product | dihydrolipoamide acetyltransferase |
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| Protein accession | YP_001186077 |
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| Protein GI | 146305612 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1038] Pyruvate carboxylase |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.157653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000480279 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGAAT TGATTCGCGT ACCCGACCTC GGCGGTGAAG GCGAGGTGAT TGAACTGCTG
GTCAAGGTCG GCGACCGTAT CGAAGCCGAG CAGAGCGTAC TGACCCTGGA GTCCGACAAG
GCCTCCATGG AAGTGCCCTC GCCCAAGGCC GGCGTGGTCA AGGAAATCAA GGTCAAGATC
GGCGACCGCC TGAAGGAAGG CGACGAGCTG CTGGTGCTGG AAGTCGAAGG GGCTGCGCAA
GCCGCACCGG CGCCGAAAGC CGAAGCTGCG CCTGCCCAGG CCCCGCAAGC GGCCGCTCCG
GCAGCCGCAC CCGCCGCCGC TGCCACCGGC AGCAGCGTGC AGGACGTGCA CGTACCGGAC
ATCGGCTCCA GCGCCAAGGG CAAGGTCATC GAGATCATGG TCAAGGTCGG CGACCGCATC
GAAGCCGACC AGAGCCTGCT GACCCTGGAG TCCGACAAGG CCTCCATGGA AATCCCCGCA
CCGGCTGCCG GCGTGGTGGA GCAGGTGCTG GTCAAGCTGG ACGACGAGAT CGGCACTGGC
GACCTGATCC TCAAGCTCAA GGTCGAAGGC GCTGCCCCCG CAGCTGCTGC CCCGGCAGCC
GCTCCTGCGC AGGCCGCCGC ACCCGCTGCC GCCCCTGCAC CGGCCGCCGC GCCGAGCGGC
AGCAGCGTGC AGGACGTACG TGTGCCGGAC ATCGGCTCCA GCGCCAAGGG CAAGGTCATC
GAGATCATGG TCAAGGCTGG CGACAGCATC GAAGCCGACC AGAGCCTGCT GACCCTGGAA
TCCGACAAGG CCTCCATGGA AATCCCCTCG CCGGCTGCCG GCGTGGTGGA AGAAGTGCTG
GTCAAGCTGG ATGACGAGAT CGGCACCGGC GACCTGATTC TCAAGCTCAA GGTAGCCGGC
TCTGCTTCTG CACCCGCCCC GGCGCAAGCC AGCCAGGAAG TGCACCGTGT GCCGGAAGGT
GCGGCGCCGG AAGTGGCCGC CGAAGTGCGC GCCATCGCCT CGCTGTCGGC TGCTGCCGCC
GAAGTCGCCA ATGCGCCCAA GCGCGATGGC GCCAAGGTGC ATGCCGGCCC GGCCGTGCGT
CAGCTGGCCC GCGATTTCGG CGTGGAACTG GCGGATATCG CCGGCACCGG CCCGAAAGGT
CGCATCCTCA AGGAAGACGT GCAGGCGTAC GTCAAGGCGA TGATGCACAA GGCCAAGGCC
GCGCCGCAGG CAGCTGCAGC CGCTACCGGC GGCGCCGGCA TTCCGCCGAT CCCGGCCGTG
GACTTCAGCA AGTTCGGTGA AATCGAAGAA GTGGCGATGA CCCGCCTGAT GCAGGTCGGC
GCCGCCAACC TGCACCGCAG CTGGCTCAAC GTGCCACACG TGACCCAGTT CGACTCGGCC
GACATCACCG ACCTGGAAGC CTTCCGCGTC GCGCAGAAGG CCGTGGCGGA AAAGGCCGGC
GTCAAGCTGA CCGTGCTGCC GCTGCTGCTC AAGGCCTGTG CCCACCTGCT CAAGGAACTG
CCGGACTTCA ACAGTTCGCT GGCCCCGAGC GGCAAGGCGC TGATCCGCAA GAAGTACGTG
CATATCGGCT TCGCCGTCGA TACGCCGGAC GGCCTGCTGG TGCCGGTGAT CAAGAACGTC
GACCAGAAGA GCCTGCTGCA GCTGGCCGGC GAAGCCGCCG CACTGGCCGA CAAGGCCCGC
ACCAAGAAGC TCTCGGCTGA TGACATGCAG GGCGCCTGCT TCACCATCTC CAGCCTCGGC
CACATTGGCG GCACCGGCTT CACGCCGATC GTCAACGCGC CGGAAGTGGC GATTCTCGGT
GTGAGCAAGG CCACCATGCA GCCGGTGTGG GACGGCAAGG CCTTCCAGCC CAAGCTGATG
CTGCCGCTGT CGCTGTCCTA CGACCACCGG GTGATCAATG GCGCTGCCGC GGCGCGCTTC
ACCCAGCGTC TGTCGCAGCT GCTGGCCGAC ATCCGCACCA TCCTGCTGTA A
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| Protein sequence | MSELIRVPDL GGEGEVIELL VKVGDRIEAE QSVLTLESDK ASMEVPSPKA GVVKEIKVKI
GDRLKEGDEL LVLEVEGAAQ AAPAPKAEAA PAQAPQAAAP AAAPAAAATG SSVQDVHVPD
IGSSAKGKVI EIMVKVGDRI EADQSLLTLE SDKASMEIPA PAAGVVEQVL VKLDDEIGTG
DLILKLKVEG AAPAAAAPAA APAQAAAPAA APAPAAAPSG SSVQDVRVPD IGSSAKGKVI
EIMVKAGDSI EADQSLLTLE SDKASMEIPS PAAGVVEEVL VKLDDEIGTG DLILKLKVAG
SASAPAPAQA SQEVHRVPEG AAPEVAAEVR AIASLSAAAA EVANAPKRDG AKVHAGPAVR
QLARDFGVEL ADIAGTGPKG RILKEDVQAY VKAMMHKAKA APQAAAAATG GAGIPPIPAV
DFSKFGEIEE VAMTRLMQVG AANLHRSWLN VPHVTQFDSA DITDLEAFRV AQKAVAEKAG
VKLTVLPLLL KACAHLLKEL PDFNSSLAPS GKALIRKKYV HIGFAVDTPD GLLVPVIKNV
DQKSLLQLAG EAAALADKAR TKKLSADDMQ GACFTISSLG HIGGTGFTPI VNAPEVAILG
VSKATMQPVW DGKAFQPKLM LPLSLSYDHR VINGAAAARF TQRLSQLLAD IRTILL
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