| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0567 |
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| Symbol | |
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| ID | 5108191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 617504 |
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| End bp | 620767 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640501780 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001186069 |
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| Protein GI | 146305604 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0552282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000000000212216 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGGAAT ACACGGAGGT TGAGCAGCCC TTCCTGCAGC AGCTGCAAGC GCAGGGCTGG
ACCGTCATCG ACCAAGGTAC AGTCGTACCT CAGGATCCCA TGCCAAGTTT GCGTTCGAGC
TTTCGCCAGT GGCTGCTACC TGAAGTCTTC GATGCGGCCG TCCGTAGCAT CAATCGCACC
GATGACGGCC GGGAGTGGCT AACTGATAAA CAGCTTGATG ACCTGCGTGG GCAGCTGTTA
CGTCAACCCA ACCGCACACT GTTGGAAGCC AACGAAGCCG TGCAGGCATT GTTGTTTAAG
GCGCAAGTGG ATAGCAACGA ACTGACGGGT GAAGCTGACC CAATCGTTCG TTTGATCGAC
TTCCACACAC CTGAGAACAA CCGGTTTCAC GCGATCAACC AATTCCGCAT CGATACGCCG
GGCTGCGTAA GGGCCTTTAT CATCCCGGAC ATTGTTCTGT TCGTGAATGG CATCCCGCTG
GTTGTTGTGG AGTGCAAGAA GGGATCTGCA ACCTGCGCCA ACCCCATGCA GGAAGCCTTT
GTGCAGTTAC AGCGCTATAT GCGTAAGCGT AAGGAAACTG CGGCGGCGGG TTTGACTGAA
GGCGAGCCAC GCCTGTTTCA CAGCAGCCTG TTGTTGATTC GTAGCTGCGG CCTTGAGGCG
GATTACGGCA CGATCACCTC GGGTGAAGAG CACTTCTACG GCTGGAAGAC GCTTTACCCG
GCTAATGATG CTGCTAGCGA GGGTATGAAT GCGCAGCAGC GACTGATTGC AGGCATGTTG
ACCCGGCATA ACCTGCTACA GATCCTGCGC ACCAGCTCGG TATTTATGGA CACTGATGGT
GGGCCGCGAA TTAAGGTTGT GTGTCGCTAT CAGCAGTTCC GCGCTGCAAA CAAAATCATT
GAGCGTCTAC GCAGCGGTAA AACCGCTATG GAGCGCGGCG GCGTCGTGTG GCACACCCAA
GGCTCCGGTA AGTCCCTGAC CATGGTGTTC CTGGCGCGCA TGCTGCGTGC CAGTCGTGAT
CTCAATGACT ACAAGGTGAT TCTAGTCAAC GACCGCCAGG ATTTGGAGGA GCAGCTAGGG
GAGACCGCCA CTTTGATTGG TGGGCGAGTC AATGTGATCG AGACTCGTCA AGATCTGCGT
AAGCACCTAG CCACAGAAAG CTCTGACATC AACATGGTGA TGGTGCACAA GTTTCAGGAG
CACAAGCAGA CGCTCACCAA TACGGTGGCT GAGGCGCTGG GTACTTATCT GGCGATGCCC
TCCGGTAAAA CCTTTGGCGT AGTGAATACC TCTGATCGAA TCATTTTGAT GATCGATGAA
GCACATCGAA CCCAAAGTTC GGACTTGGGC GAGAACTTGT TCGAGGCGTT CCCCAATGCA
ACGCGTATCG CCTTTACCGG CACTCCGCTG CTGACTGAGC GTCATGGGGA GAGGAAAACC
CACAAGCGTT TTGGCGAGTA CATCGACACT TATCGGTTGC TGGACGCAGT AAACGACGGT
GCCACGCTGC AAATTCTGTA TGAAGGCAAA ACCGCCGACA GTGCGCTGAC GGAAAAGCAC
GCATTTGATC AGGCCTTCGA AGACCTCTTT CGTGATCGTA GTGAAGAAGA GCTGTTGGCG
ATCAAGAAGA AATATGGCGC GACGGGCGAC ATCCTTGAGG CTGAGAACCG CATCAACGCA
ATTGCGCGTG ATTTGGTCCG GCACTACATC GATAACATCT TGCCTAACGG TTTCAAGGCT
CAGGTGGTCT GCCATTCCAA GCTCGCGTGT ATTCGTTACC AGGCAGGTAT TGAGGCTGCA
ATTGCTGAGC GTATTGAGCA GGAGCAGGTC AAGACTGCGC CGGATGCTGA CTTGCTGCGG
CGTCTACGCT TCCTGAAAAC AGCTGTGGTG GTGTCTTCGG ACGGCACCAA TGAGGCGGCT
TTTATCACCC AGGCTCGCAA GCAGGCTGCG CGAATGGGGG CCGTTGAGAA TTTCTGCCGT
GGTTTTGATC TGGATGACCC AGACAAGGAG TACAGCGGCA TCGCCTTTTT GATCGTCTGT
GACATGCTCT TGACCGGTTT CGATGCGCCG ATTGAGCAGG TGATGTACAT CGACAAGAAA
CTGCGCGAGC ACACCTTGCT CCAGGCGATT GCTCGTACCA ATCGGGTGAA AAAGGGCAAG
CAGCGTGGCT ATGTGGTGGA TTACATCGGC CTGGCCAACC ACCTGACCGA TGCGCTTACG
CTGTATGCAG CTAGTGATGA GTTGCAGGAG CTGCACGACG GGATGCAGAA CATTACGTCT
GAGTTGCCTG TGCTGGAGGA GCGCTATCAG CGACTGCTGC AGCACTTCAC GGCGCTGGGG
GTAAGGAGCA TAGGTGCTTT TGTGACGGGC ACTTTGTCTG GCCTTGAGGC TGATGCTGCT
GTGGTACATG AAGCGGTAAA AGCCTTGAAG GATGAAAAGC TGCGGGCCGA CTTCGAGGTG
TATCTGAAGA AGTTCCTGAT GAGTATGGAC ATCATCCTGC CACATCCTTC GGCTCAGCCG
TATCGTGTGC CTGCCAAGCG CTTCGGTTAC ATCTTGCAGG TCACTAAAGA GCGTTACAAA
GACGCCAGCC TCGATTTGAG TGGTGCCGGT GAAAAGGTTA AGGCGCTGAT CAATGATCAT
CTGATCAGTT TGGGTATCAA CCCGAAGGTC GAGCCTGTGG AGCTTTTGGC TGAGGACTTT
CTTGAGAAGT TAGCGGCACA TTCCGGCAAG AACGTTGAGG CCAAAGCCAG CGAAATGGAG
CATGCCATTC GCAAGCACTG TACGGTGCAT CATGATGAGG ACCCTGCTTT TTTCAAAAGC
CTTTCCGAGA AAGTCGATGC GTTGATCGAG AAGCATCAGG ATGAGTGGGA CTTGCTGGTT
GAGAAGCTAG CGGAGCTCCG AAGCGAGGCC GTTGCAGGTC GCCAGAAAGG CGAGGAGGGT
ATGAGTAAGG AGGCTACCAC GTTTTATGCA CATATCATCC AGGTCGGATT TGCTGGTGGC
GTTGTCGCCG GGGGCGATAA GGATAAATTC AAGGCCTTGA TGGAAGCGAC GGTGGATTTG
CTTCAGGAGA CCATAGGCAG CATCGACTTC TGGCAGAACC CAGACAAGCA AAAGCGCATT
CGCGGTCTAC TCAAGACGGA GATAAGCAAA ACCGGTATTG ATGAGCTCAA ACAGAATCGT
GAGCGTGTTG CTATTGAAAT CATGAAGTTG GCCAAAAACC GCCATGATGA GTTGACCCGT
GTTGTGCGGG CGGGAATTGC ATGA
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| Protein sequence | MSEYTEVEQP FLQQLQAQGW TVIDQGTVVP QDPMPSLRSS FRQWLLPEVF DAAVRSINRT
DDGREWLTDK QLDDLRGQLL RQPNRTLLEA NEAVQALLFK AQVDSNELTG EADPIVRLID
FHTPENNRFH AINQFRIDTP GCVRAFIIPD IVLFVNGIPL VVVECKKGSA TCANPMQEAF
VQLQRYMRKR KETAAAGLTE GEPRLFHSSL LLIRSCGLEA DYGTITSGEE HFYGWKTLYP
ANDAASEGMN AQQRLIAGML TRHNLLQILR TSSVFMDTDG GPRIKVVCRY QQFRAANKII
ERLRSGKTAM ERGGVVWHTQ GSGKSLTMVF LARMLRASRD LNDYKVILVN DRQDLEEQLG
ETATLIGGRV NVIETRQDLR KHLATESSDI NMVMVHKFQE HKQTLTNTVA EALGTYLAMP
SGKTFGVVNT SDRIILMIDE AHRTQSSDLG ENLFEAFPNA TRIAFTGTPL LTERHGERKT
HKRFGEYIDT YRLLDAVNDG ATLQILYEGK TADSALTEKH AFDQAFEDLF RDRSEEELLA
IKKKYGATGD ILEAENRINA IARDLVRHYI DNILPNGFKA QVVCHSKLAC IRYQAGIEAA
IAERIEQEQV KTAPDADLLR RLRFLKTAVV VSSDGTNEAA FITQARKQAA RMGAVENFCR
GFDLDDPDKE YSGIAFLIVC DMLLTGFDAP IEQVMYIDKK LREHTLLQAI ARTNRVKKGK
QRGYVVDYIG LANHLTDALT LYAASDELQE LHDGMQNITS ELPVLEERYQ RLLQHFTALG
VRSIGAFVTG TLSGLEADAA VVHEAVKALK DEKLRADFEV YLKKFLMSMD IILPHPSAQP
YRVPAKRFGY ILQVTKERYK DASLDLSGAG EKVKALINDH LISLGINPKV EPVELLAEDF
LEKLAAHSGK NVEAKASEME HAIRKHCTVH HDEDPAFFKS LSEKVDALIE KHQDEWDLLV
EKLAELRSEA VAGRQKGEEG MSKEATTFYA HIIQVGFAGG VVAGGDKDKF KALMEATVDL
LQETIGSIDF WQNPDKQKRI RGLLKTEISK TGIDELKQNR ERVAIEIMKL AKNRHDELTR
VVRAGIA
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