Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0552 |
Symbol | hemE |
ID | 5108176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 595567 |
End bp | 596634 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640501765 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001186054 |
Protein GI | 146305589 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00147846 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCCC TGAAGAACGA CCGTTTCCTG CGTGCCCTGC TCAAGCAACC CGTGGATGTC ACGCCGATCT GGATGATGCG CCAGGCCGGC CGCTATCTGC CGGAGTACCG CGCGACCCGG GCCAAGGCCG GCGACTTCGT GAGCCTGATG AAGAACCCGG AACTGGCCTG CGAGGTCACC ATCCAGCCGC TGGACCGCTA CCCGCAACTG GATGCGGCGA TCCTCTTTTC CGACATCCTC ACCATCCCTG ATGCTATGGG CCAGGGCCTG TACTTCGAGA CCGGCGAAGG CCCGCGCTTC AAGAAGGCGG TCGGCAGCCT GGCCGATATC GAGGCGCTGC CGGTGCCCGA CCCGGAGAAG GATCTGGGCT ATGTGATGGA CGCGGTGCGT ACCATCCGCC GCGAGCTGAA CGGTCGTGTG CCGCTGATCG GCTTCTCCGG CAGCCCCTGG ACGCTGGCCA CCTACATGGT CGAAGGCGGC TCGTCGAAGG ACTTCCGCAA GTCCAAGGCC ATGCTCTACG ACAATCCGCA GGCCATGCAT GCGCTGCTCG ACAAGCTGGC GCAGTCGGTG ACTGCCTACC TCAACGGGCA GATTCTGGCC GGGGCGCAGG CGGTGCAGAT CTTCGATTCC TGGGGTGGCG CGCTGTCGGC GGCGGCCTAT CAGGAGTTCT CCCTGGCCTA CATGAAGAAG ATCGTCGACG GCCTGATCCG CGAGCACGAC GGGCGCCGCG TGCCGGTGAT CCTGTTCACC AAGGGCGGCG GTCTGTGGCT GGAGTCCATG GCCGACAGTG GCGCCGAGGC GCTGGGTCTG GACTGGACCT GCGACATCGG CAGCGCGCGT GCCCGTGTCG GGTCCAAGGT CGCCCTGCAG GGCAACATGG ACCCGGCGGT GCTCTACGCC AAGCCGGCAG CGATCCGCGC CGAAGTGGCG CGCATCCTGG CCGCCTACGG CGCCGGCAGC GGCCACGTCT TCAACCTCGG CCACGGCATC ACCCCGGAGG TCGACCCGGC TCACGCGGGC GCCTTCTTCG AGGCGGTGCA CGAGCTGTCG GCGGCTTATC ACCGCTGA
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Protein sequence | MTALKNDRFL RALLKQPVDV TPIWMMRQAG RYLPEYRATR AKAGDFVSLM KNPELACEVT IQPLDRYPQL DAAILFSDIL TIPDAMGQGL YFETGEGPRF KKAVGSLADI EALPVPDPEK DLGYVMDAVR TIRRELNGRV PLIGFSGSPW TLATYMVEGG SSKDFRKSKA MLYDNPQAMH ALLDKLAQSV TAYLNGQILA GAQAVQIFDS WGGALSAAAY QEFSLAYMKK IVDGLIREHD GRRVPVILFT KGGGLWLESM ADSGAEALGL DWTCDIGSAR ARVGSKVALQ GNMDPAVLYA KPAAIRAEVA RILAAYGAGS GHVFNLGHGI TPEVDPAHAG AFFEAVHELS AAYHR
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