Gene Pmen_0552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0552 
SymbolhemE 
ID5108176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp595567 
End bp596634 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content67% 
IMG OID640501765 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_001186054 
Protein GI146305589 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00147846 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGCCC TGAAGAACGA CCGTTTCCTG CGTGCCCTGC TCAAGCAACC CGTGGATGTC 
ACGCCGATCT GGATGATGCG CCAGGCCGGC CGCTATCTGC CGGAGTACCG CGCGACCCGG
GCCAAGGCCG GCGACTTCGT GAGCCTGATG AAGAACCCGG AACTGGCCTG CGAGGTCACC
ATCCAGCCGC TGGACCGCTA CCCGCAACTG GATGCGGCGA TCCTCTTTTC CGACATCCTC
ACCATCCCTG ATGCTATGGG CCAGGGCCTG TACTTCGAGA CCGGCGAAGG CCCGCGCTTC
AAGAAGGCGG TCGGCAGCCT GGCCGATATC GAGGCGCTGC CGGTGCCCGA CCCGGAGAAG
GATCTGGGCT ATGTGATGGA CGCGGTGCGT ACCATCCGCC GCGAGCTGAA CGGTCGTGTG
CCGCTGATCG GCTTCTCCGG CAGCCCCTGG ACGCTGGCCA CCTACATGGT CGAAGGCGGC
TCGTCGAAGG ACTTCCGCAA GTCCAAGGCC ATGCTCTACG ACAATCCGCA GGCCATGCAT
GCGCTGCTCG ACAAGCTGGC GCAGTCGGTG ACTGCCTACC TCAACGGGCA GATTCTGGCC
GGGGCGCAGG CGGTGCAGAT CTTCGATTCC TGGGGTGGCG CGCTGTCGGC GGCGGCCTAT
CAGGAGTTCT CCCTGGCCTA CATGAAGAAG ATCGTCGACG GCCTGATCCG CGAGCACGAC
GGGCGCCGCG TGCCGGTGAT CCTGTTCACC AAGGGCGGCG GTCTGTGGCT GGAGTCCATG
GCCGACAGTG GCGCCGAGGC GCTGGGTCTG GACTGGACCT GCGACATCGG CAGCGCGCGT
GCCCGTGTCG GGTCCAAGGT CGCCCTGCAG GGCAACATGG ACCCGGCGGT GCTCTACGCC
AAGCCGGCAG CGATCCGCGC CGAAGTGGCG CGCATCCTGG CCGCCTACGG CGCCGGCAGC
GGCCACGTCT TCAACCTCGG CCACGGCATC ACCCCGGAGG TCGACCCGGC TCACGCGGGC
GCCTTCTTCG AGGCGGTGCA CGAGCTGTCG GCGGCTTATC ACCGCTGA
 
Protein sequence
MTALKNDRFL RALLKQPVDV TPIWMMRQAG RYLPEYRATR AKAGDFVSLM KNPELACEVT 
IQPLDRYPQL DAAILFSDIL TIPDAMGQGL YFETGEGPRF KKAVGSLADI EALPVPDPEK
DLGYVMDAVR TIRRELNGRV PLIGFSGSPW TLATYMVEGG SSKDFRKSKA MLYDNPQAMH
ALLDKLAQSV TAYLNGQILA GAQAVQIFDS WGGALSAAAY QEFSLAYMKK IVDGLIREHD
GRRVPVILFT KGGGLWLESM ADSGAEALGL DWTCDIGSAR ARVGSKVALQ GNMDPAVLYA
KPAAIRAEVA RILAAYGAGS GHVFNLGHGI TPEVDPAHAG AFFEAVHELS AAYHR