| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0551 |
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| Symbol | gltD |
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| ID | 5108175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 594030 |
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| End bp | 595448 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640501764 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_001186053 |
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| Protein GI | 146305588 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.00592463 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGAAC GTCTGAATAA CGACTTCCAG TTCATCGAAG TCGGGCGCAA AGACCCGAAG
AAGAAACTGC TGCGTCAGCG CAAGAAGGAA TTCGTCGAGA TCTACGACAA CTTCAAGCCG
GCGCAGGCCG CTGACCAGGC GCATCGCTGC CTGGGCTGCG GCAACCCGTA TTGCGAGTGG
AAGTGCCCGG TGCACAACTT CATTCCGAAC TGGCTCAAGC TGGTGTCGGA AGGCAACATC
CTGGCCGCCG CCGAACTCTC GCACCAGACC AACACCCTGC CGGAGGTCTG CGGCCGCGTG
TGCCCGCAGG ATCGTCTGTG CGAGGGTGCC TGCACCCTCA ATGACGGCTT CGGCGCGGTG
ACCATCGGCT CGGTGGAGAA GTACATCACC GACACCGCCT TCGCCATGGG CTGGCGTCCG
GACATGTCCA AGGTCAAGCC GACCGGCAAG CGTGTCGCGG TAATCGGTGC CGGCCCGGCC
GGCCTGGGCT GCGCCGACGT GCTGGTGCGC AACGGCGTGA CCCCGGTGGT GTTCGACAAG
AACCCGGAAA TCGGTGGTCT GCTGACCTTC GGCATTCCCG AGTTCAAGCT GGAGAAGAGC
GTGCTCAGCC GTCGCCGTGA AGTCTTCACC GGCATGGGTA TCGAATTCCG CCTGAACACC
GAGATCGGCA AGGACGTGAC CATGCAGCAA TTGCTGGATG AGTACGATGC CGTGTTCATG
GGCATGGGCA CCTACACCTA CATGAAGGGC GGCTTCCCGG GCGAGGACCT GCCGGGCGTC
TACGACGCGC TGGACTTCCT CATCGCCAAC GTCAACCGCA ACCTGGGTTT CGAGAAGTCG
CCGGAAGACT TCATCGACAT GAAGGGCAAG CGCGTCGTGG TGCTGGGCGG TGGCGACACC
GCGATGGATT GCAACCGCAC CTCGATCCGT CAGGGCGCCA AGGCCGTGAC CTGCGCCTAT
CGTCGTGACG AAGAGAACAT GCCCGGCTCG CGCAAGGAAG TGAAGAACGC CAAGGAAGAG
GGCGTGAAGT TCCTCTTCAA CCGCCAACCC ATCGCCATCG TCGGCGAAGA CAAGGTGGAA
GGCATCAAGG TGGTCGAGAC CCGTCTCGGT GAGCCGGATG CCCGTGGCCG TCGCAGCCCC
GAGCCGATCC CGGGCTCCGA GGAGATCATC CCGGCCGAAG CCGTGCTGAT CGCCTTCGGT
TTCCGTCCGA GCCCGGCGCC CTGGTTCGAG CAGTTCGAGA TCCAGACCGA CAGCCAGGGC
CGCGTCGTGG CACCCGAGCA GTCGCAGTTC AAGCACCAGA CCAGCAACCC GAAGATCTTC
GCCGGTGGCG ACATGGTGCG TGGTTCCGAC CTGGTGGTGA CGGCCATCTT CGAAGGTCGT
AATGCTGCCG AAGGCATCCT CGACTATCTG GGCGTCTGA
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| Protein sequence | MTERLNNDFQ FIEVGRKDPK KKLLRQRKKE FVEIYDNFKP AQAADQAHRC LGCGNPYCEW
KCPVHNFIPN WLKLVSEGNI LAAAELSHQT NTLPEVCGRV CPQDRLCEGA CTLNDGFGAV
TIGSVEKYIT DTAFAMGWRP DMSKVKPTGK RVAVIGAGPA GLGCADVLVR NGVTPVVFDK
NPEIGGLLTF GIPEFKLEKS VLSRRREVFT GMGIEFRLNT EIGKDVTMQQ LLDEYDAVFM
GMGTYTYMKG GFPGEDLPGV YDALDFLIAN VNRNLGFEKS PEDFIDMKGK RVVVLGGGDT
AMDCNRTSIR QGAKAVTCAY RRDEENMPGS RKEVKNAKEE GVKFLFNRQP IAIVGEDKVE
GIKVVETRLG EPDARGRRSP EPIPGSEEII PAEAVLIAFG FRPSPAPWFE QFEIQTDSQG
RVVAPEQSQF KHQTSNPKIF AGGDMVRGSD LVVTAIFEGR NAAEGILDYL GV
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