Gene Pmen_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0540 
Symbol 
ID5108164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp577014 
End bp578282 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content63% 
IMG OID640501753 
Productmalate dehydrogenase 
Protein accessionYP_001186042 
Protein GI146305577 
COG category[C] Energy production and conversion 
COG ID[COG0281] Malic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGATC TAAAAACTGC CGCTCTCGAA TATCACGCTC AGCCCCGCCC AGGTAAGCTG 
AGCGTCGAGT TGACCAAAGC CACCGCTACC GCCCGCGACC TGTCGCTGGC CTACAGCCCA
GGTGTCGCCG AGCCGGTCCG CGAAATCGCC CGCGATGCCG AGCTGGCCTA CCGTTACACC
GGTAAAGGCA ACTTGGTCGC CGTGATTTCC GATGGCACCG CTATCCTCGG CCTGGGCAAC
CTCGGCCCGC TGGCGTCCAA GCCGGTCATG GAAGGCAAGG GTGTGCTGTT CAAGCGTTTC
GCCGGCATCG ACGTGTTCGA CATCGAGGTC GATTCCGAGA GCCCGCAGGC TTTCATCGAT
ACCGTAAAGC GCATCTCCAT CACCTTCGGC GGCATCAACT TGGAAGATAT CAAGGCCCCC
GAGTGCTTCG AGATCGAGCG CGCACTGATC GAGCAATGCG ACATCCCGGT GTTCCACGAT
GACCAGCACG GCACCGCGAT CGTCACCGCG GCCGGCATGC TCAACGCCCT GGAAATCGCC
GGCAAGACCC TGGAAGAAGC CAAGATCGTC TGCCTCGGCG CCGGCGCAGC GGCCATCTCC
TGCATGAAGC TGCTGGTGAG CATGGGCGCC AAGGTCGAGA ACATCTTCAT GATCGACCGC
AAGGGCGTGA TCCACGCCGG CCGCGACGAC CTGAACCAGT ACAAGGCGGT ATTCGCTCAC
GAAACCGACC GTCGCACCCT GTCCGATGCC CTCGACGGTG CGGACGTATT CGTCGGTCTG
TCCGGCGCCA ACCTGCTGAG CCCGGAAGAC CTCAAGCGCA TGGCGGCCAA CCCGATCGTC
TTCGCCTGCT CCAACCCGGA TCCGGAAATC AAGCCGGAGC TGGCGCACGA GACCCGTAGC
GACGTGATCA TGGCCACCGG TCGTTCCGAC TACCCGAACC AGGTCAACAA CGTGCTGGGC
TTCCCCTTCA TCTTCCGCGG TGCCCTGGAC GTGCGCGCCA CCCGCATCAA CGAAGAAATG
AAGATCGCCG CTGCCCTGGC GCTGCGTGAC CTGGCCAAGC TGCCGGTACC GCAGGACGTG
TGCGATGCCT ACGGCGGCAT CAAGCTGGAG TTCGGCCGCG AGTACATCAT TCCGAAGCCG
ATGGATCAGC GTCTGATCAC CGTGGTCTGC GATGCCGTGG CCAAGGCCGC GATCGAGTCC
GGCGTGGCGA CTCTGCCCTA TCCGAAGCAC TATCCGCTGC AGTCGGTGGA TGAAGTGTTC
AACGGCTAA
 
Protein sequence
MSDLKTAALE YHAQPRPGKL SVELTKATAT ARDLSLAYSP GVAEPVREIA RDAELAYRYT 
GKGNLVAVIS DGTAILGLGN LGPLASKPVM EGKGVLFKRF AGIDVFDIEV DSESPQAFID
TVKRISITFG GINLEDIKAP ECFEIERALI EQCDIPVFHD DQHGTAIVTA AGMLNALEIA
GKTLEEAKIV CLGAGAAAIS CMKLLVSMGA KVENIFMIDR KGVIHAGRDD LNQYKAVFAH
ETDRRTLSDA LDGADVFVGL SGANLLSPED LKRMAANPIV FACSNPDPEI KPELAHETRS
DVIMATGRSD YPNQVNNVLG FPFIFRGALD VRATRINEEM KIAAALALRD LAKLPVPQDV
CDAYGGIKLE FGREYIIPKP MDQRLITVVC DAVAKAAIES GVATLPYPKH YPLQSVDEVF
NG