Gene Pmen_0526 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0526 
Symbol 
ID5108150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp560422 
End bp561276 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content65% 
IMG OID640501739 
Productpoly(hydroxyalkanoate) granule-associated protein 
Protein accessionYP_001186028 
Protein GI146305563 
COG category[S] Function unknown 
COG ID[COG3937] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01837] poly(hydroxyalkanoate) granule-associated protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.170611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTTA AAAAGAAAAC CGAGAAACAG ACCAGCTCCT GGATCGGCGA GGTCGAGAAA 
TACTCGCGTC AGATCTGGTT GGCAGGCTTG GGCGCTTACT CCAAGGTCAG CAAGGACGGC
ACCAAGCTGT TCGATACGCT GGTCAAGGAT GGCGAGAAGG CCGAGAAGCT GGCCAAGAGC
GAAGTCGACA AGCAGGTCGG TGCGGTGAAA GCCGGCGTCG GTGCCAAGGT CGGTTCCGCC
AAGTCCAAGG TCGATGAGGT CAAGGACAAG GCGATCGGCA AGTGGAGCGA GCTGGAAGAG
GCCTTCGACA AGCGTCTGAA CAATGCCATC TCGCGCCTGG GCGTGCCCAG CCGCAACGAA
GTGAAGGCGT TGAACGACAA GGTCGACAGC CTGACCAAGC AGCTGGAGAA AATCGCCGGC
GTATCGGCAA AGTCAGTGGC CAAGCCTGCT GCCAAAGCTG CGCCCAAGCC TGCCGCCAAG
CCCGCCGTCA AAGCAGCGAG CAAACCTGCT GCGAAGCCGG CCGCCAAGCC TGCTGCCAAA
GCTGCAGCCA AGCCGGCTGC CAAACCGGCC GCGGCGAAAG CTGCTGCGAA ACCTGCAGCC
GCCAAGCCGG CAGCCAAACC TGCGGCGAAA CCGGCAGCCA AGGCCGCAGC GAAACCCGCT
GCCAAGCCAG CGGCCGCCCC CAAGCCAGCA GCCAAGCCTG CTGCGGCGAA GAAGCCGGCT
GCGAAGAAAC CGGCAGCGCC CAAGGCTGCT GCGCCGAAAC CGGCTGCACC GGCACCGGCT
CCGGCCGCCG CGGCAACGCC GGCCGCTGCA CCGGCTCCGG CTGCCACCCC GGCAACTCCA
GCCACCCCGT CCTGA
 
Protein sequence
MAVKKKTEKQ TSSWIGEVEK YSRQIWLAGL GAYSKVSKDG TKLFDTLVKD GEKAEKLAKS 
EVDKQVGAVK AGVGAKVGSA KSKVDEVKDK AIGKWSELEE AFDKRLNNAI SRLGVPSRNE
VKALNDKVDS LTKQLEKIAG VSAKSVAKPA AKAAPKPAAK PAVKAASKPA AKPAAKPAAK
AAAKPAAKPA AAKAAAKPAA AKPAAKPAAK PAAKAAAKPA AKPAAAPKPA AKPAAAKKPA
AKKPAAPKAA APKPAAPAPA PAAAATPAAA PAPAATPATP ATPS