Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0516 |
Symbol | |
ID | 5108140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 554215 |
End bp | 555009 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640501729 |
Product | Sec-independent protein translocase, TatC subunit |
Protein accession | YP_001186018 |
Protein GI | 146305553 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.852209 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCAAAC TGCCGGACGC CGACCAGGAA ATGCCCCTGG TCTCGCACCT GACCGAACTG CGCACGCGCC TGCTGCGTTG CGTGGTGATC ATCCTGCTGA TCTTCGCCGG CCTGTTCTAT TTCGCCCAGG ACATCTACGC CCTGGTCGCC GCACCGCTGC GCGCCTATCT GCCGGACGGC GCGACGATGA TCGCCACCGG CGTCGCCTCG CCCTTCCTCA CGCCGTTCAA GCTGACACTG ATGTGCGCGC TGTTTCTCGG CATGCCGGTG ATCCTGCACC AGGCCTGGGG CTTCATCGCG CCGGGGCTGT ACACCCATGA ACGGCGCATC GCCGTGCCGC TGCTGATCTC CAGCATCTTC CTGTTCTATG CCGGTATGGC CTTCGCCTAC TTCGTGGTCT TTCCCATCAT GTTCGGCTTC TTCGCCAGCG TGACCCCGGA AGGCGTGGCG ATGATGACCG ACATCGGTCA GTACCTGGAC TTCGTCCTGA CCCTGTTCTT CGCCTTCGGC GTGGCCTTCG AGATTCCCAT CGCCACCTTC CTGCTGATCT GGGTCGGCAT CGTCGACGTG GCCACCCTGC GCAAGAGCCG CCCCTACGTG ATCGTCGGCT GCTTCGCCGT GGGCATGCTG CTGACGCCGC CGGACGTGTT CTCGCAGACC CTGCTGGCCG TACCGATGTG GCTGCTGTTC GAAGCCGGCG TGCTGGCCGG CGCCCTGGTC AAGCGCAAGC GCGACGAGGA AAAGGCCGAG GAAGAGGCCA AGCCCGAAGA CCAGCCGCCC GCGCCACTGT CGTGA
|
Protein sequence | MSKLPDADQE MPLVSHLTEL RTRLLRCVVI ILLIFAGLFY FAQDIYALVA APLRAYLPDG ATMIATGVAS PFLTPFKLTL MCALFLGMPV ILHQAWGFIA PGLYTHERRI AVPLLISSIF LFYAGMAFAY FVVFPIMFGF FASVTPEGVA MMTDIGQYLD FVLTLFFAFG VAFEIPIATF LLIWVGIVDV ATLRKSRPYV IVGCFAVGML LTPPDVFSQT LLAVPMWLLF EAGVLAGALV KRKRDEEKAE EEAKPEDQPP APLS
|
| |