| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0515 |
|---|
| Symbol | |
|---|
| ID | 5108139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 553508 |
|---|
| End bp | 554218 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640501728 |
|---|
| Product | 16S ribosomal RNA methyltransferase RsmE |
|---|
| Protein accession | YP_001186017 |
|---|
| Protein GI | 146305552 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGC TGCTGCTGGA AGACGCCGAC TTCGTCGGCG AGGATCGGGT ACGCCTCAGC
GGCCGACGCC TGAAGCATCT GCATGAGGTA CACCGCGCCG AGGCCGGCGA CCGCCTACGC
GTCGGCCGCC TTGGCGGGCT GATGGGCGAA GGTCGGCTGA TGGCCCTGGA TGCCGAGCAC
GCCGAGCTGC AGGTCAGCCT CGACCAGGCT CCGCCGGCCA AGCTGCCGCT GACCCTGGTG
CTCGCCCTGC CGCGGCCGAA GATGCTCAAG CGCGTACTGC AGACAGTCAG TGCCATGGGC
GTTCCGCGCC TGGTGCTGGT CAACAGCTAC CGCGTGGAGA AGAGCTTCTG GCAGACGCCC
TTTCTCGAAG CCGAAGCCAT TCGCGAACAG CTGATCCTCG GCCTGGAACA GGCGCGTGAC
ACCGTCTTGC CCGACGTGAG CATCGAGAAA CGCTTCAAGC CCTTCGTCGA GGATCGCCTG
CCGGCGTTGG CAACCGGCAC GCTGGGCCTG ATCGGTCACC CCGGTGACTA CCCGGCCTGC
CCGCGCGCCG TGGAGGAGCC GGTGACCCTG GCCATCGGCC CGGAAGGTGG CTGGATTCCC
TACGAAGTCG ATCTGCTGCG CCAGGCCGCA GGCCTGCAGC CGGTGCAACT GGGCGAACGC
ATCCTGCGTG TGGAGACGGC GGTGCCGGCG TTGCTGGCCA GATTGTTCTA A
|
|---|
| Protein sequence | MNLLLLEDAD FVGEDRVRLS GRRLKHLHEV HRAEAGDRLR VGRLGGLMGE GRLMALDAEH
AELQVSLDQA PPAKLPLTLV LALPRPKMLK RVLQTVSAMG VPRLVLVNSY RVEKSFWQTP
FLEAEAIREQ LILGLEQARD TVLPDVSIEK RFKPFVEDRL PALATGTLGL IGHPGDYPAC
PRAVEEPVTL AIGPEGGWIP YEVDLLRQAA GLQPVQLGER ILRVETAVPA LLARLF
|
|---|
| |