| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0507 |
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| Symbol | |
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| ID | 5108426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 547154 |
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| End bp | 548827 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501720 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001186009 |
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| Protein GI | 146305544 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCCT GTCTGGCTTC CGGCTGGAGC CTGTCACCGC CGGTCCTGAT GACCCTGCTG
GTGTGCTTCG GGGTGGTCCT GCTGGCGCAC TGGGTCACCC GCCAGCGCGA CTTCCCCGGG
CGTGACAGCT TCATTCTGCT GCACCTGGCC AGCCTCTGGT GGATGGGCGC CGCGGCACTG
GAAATGAGCT TCTTCGCCGC CGAATGCAAG ATGTTCTGGG CCAGTATGGC CTGGCCCGGC
ATCGTTTCCA CGCCCACGTT CTGGGCGGTA TTCCTCTGGC AGTACGTCAA CAGCATGCGC
ACGCCGTTGC CGCGTAGCAG CATCCTGGGG CTGAGCCTGG TGCCGCTGCT GGTCTGGGCT
CTGGCGCTGA GCAATCCCTG GCATGGCCTG TTCTACGGCG CCGGCAGCGC CCCCGTCGAC
GACAGTCTGG GAGCCCCGGT GCGCTATCAG CATGGCCCGC TGTTCTATGC CACGGCCGTC
TACGTCTACC TGTTCATGGC GTTCTGCATG GGTGTGGTAA GCCGCGCCGC GGCGCTCAGT
CAAGGGTTGC ACCGTCGTCA CTATCTGGCG TTCGTGCTGG TCACCGCGGT GCCCTGGGTG
GCCAACATCG GTTATGTGGT GTTCGGCTGG ACCCTGTTCG GCTTCGACCC GACCCCCTTC
AGCTTCGCCT TCACCCTGGT GGCGTTCTCC TGGCTGATCG TCGGCGTACG CCTGTTCGAC
CTGCTGCCGG TGGCGCGCCA TCTGCTGCTG GAGGCTTTGC TCGACCCGGT GCTGGTGATC
GATCCGCGTG GTCGGGTGAT CGAGGCCAAC CCGGCCGCGC TGAAACTGGC GGGGCTGCAG
CAGGGCTGGC AGGGCACCGA GCTGGGGCAG TGGCCGGTGT TCGGCGCCGA CCTGCAGCGC
CTGCTGAGTG AGGCCGGCGA GAGTGATCAG GAGCGCCCGC TGACCCTGAC CAGCGCGGCG
CGCTACTACG AAGTGCGGGT GCGCGCCATC GAACGCACCA CTCGCCACGG CCCGACCCTG
CTGGGCCATA TGCTCTACGT ACGCGACGTG ACCCAGCGCC ACCTCAGCGA GCTCAAGCTG
GCCGAGGCCC TGGCCCTGAG TGAAGAGCGT CTGCGCACCA TCTCGAATCT GCACGAGCAA
CTGCGCGAGC AGGCGCTGTG CGACCCGCTG ACCGGCCTCT ACAACCGTCG CTATCTGGAT
GAGTTCTTCT CGCGCGAACT GGCCAGGGCG CAACGCGAGA ACCTGCCACT GGCCTTGGCG
CTGATCGATC TGGACCACTT CAAACGGCTC AACGACGAGT GCGGCCACCT GGTCGGCGAC
GACGTGCTCA AGGCCGTCGC CAAGCATCTG CTGGACAACC TGCGCAGCAC CGATGCGGTG
TTTCGTATCG GCGGCGAGGA ATTCCTGCTG ATCCTGCCGG GGGTCGACCC TGTCGAGGCC
TGCGAACGCC TGCAGAACAT CTGCTCGCAG TTGGCCGGAC AGAGCATCGC CACGCGCGGC
GGCGATCAGC AGGTGACGCT GTCAGCCGGC CTGGCCCATT GGCCGCAGCA GGGAGTCGTG
CTTGAGGAGC TCCTGCATGC TGCCGATGCG GCGCTCTATC AGGCCAAACG GGGTGGGCGA
AACCGCGTTT GTTGTGCAGT CGGTAACGCC CGCGTCAGCC ATCCATCCCG CTAG
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| Protein sequence | MQACLASGWS LSPPVLMTLL VCFGVVLLAH WVTRQRDFPG RDSFILLHLA SLWWMGAAAL
EMSFFAAECK MFWASMAWPG IVSTPTFWAV FLWQYVNSMR TPLPRSSILG LSLVPLLVWA
LALSNPWHGL FYGAGSAPVD DSLGAPVRYQ HGPLFYATAV YVYLFMAFCM GVVSRAAALS
QGLHRRHYLA FVLVTAVPWV ANIGYVVFGW TLFGFDPTPF SFAFTLVAFS WLIVGVRLFD
LLPVARHLLL EALLDPVLVI DPRGRVIEAN PAALKLAGLQ QGWQGTELGQ WPVFGADLQR
LLSEAGESDQ ERPLTLTSAA RYYEVRVRAI ERTTRHGPTL LGHMLYVRDV TQRHLSELKL
AEALALSEER LRTISNLHEQ LREQALCDPL TGLYNRRYLD EFFSRELARA QRENLPLALA
LIDLDHFKRL NDECGHLVGD DVLKAVAKHL LDNLRSTDAV FRIGGEEFLL ILPGVDPVEA
CERLQNICSQ LAGQSIATRG GDQQVTLSAG LAHWPQQGVV LEELLHAADA ALYQAKRGGR
NRVCCAVGNA RVSHPSR
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