Gene Pmen_0507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0507 
Symbol 
ID5108426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp547154 
End bp548827 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content66% 
IMG OID640501720 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001186009 
Protein GI146305544 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCCT GTCTGGCTTC CGGCTGGAGC CTGTCACCGC CGGTCCTGAT GACCCTGCTG 
GTGTGCTTCG GGGTGGTCCT GCTGGCGCAC TGGGTCACCC GCCAGCGCGA CTTCCCCGGG
CGTGACAGCT TCATTCTGCT GCACCTGGCC AGCCTCTGGT GGATGGGCGC CGCGGCACTG
GAAATGAGCT TCTTCGCCGC CGAATGCAAG ATGTTCTGGG CCAGTATGGC CTGGCCCGGC
ATCGTTTCCA CGCCCACGTT CTGGGCGGTA TTCCTCTGGC AGTACGTCAA CAGCATGCGC
ACGCCGTTGC CGCGTAGCAG CATCCTGGGG CTGAGCCTGG TGCCGCTGCT GGTCTGGGCT
CTGGCGCTGA GCAATCCCTG GCATGGCCTG TTCTACGGCG CCGGCAGCGC CCCCGTCGAC
GACAGTCTGG GAGCCCCGGT GCGCTATCAG CATGGCCCGC TGTTCTATGC CACGGCCGTC
TACGTCTACC TGTTCATGGC GTTCTGCATG GGTGTGGTAA GCCGCGCCGC GGCGCTCAGT
CAAGGGTTGC ACCGTCGTCA CTATCTGGCG TTCGTGCTGG TCACCGCGGT GCCCTGGGTG
GCCAACATCG GTTATGTGGT GTTCGGCTGG ACCCTGTTCG GCTTCGACCC GACCCCCTTC
AGCTTCGCCT TCACCCTGGT GGCGTTCTCC TGGCTGATCG TCGGCGTACG CCTGTTCGAC
CTGCTGCCGG TGGCGCGCCA TCTGCTGCTG GAGGCTTTGC TCGACCCGGT GCTGGTGATC
GATCCGCGTG GTCGGGTGAT CGAGGCCAAC CCGGCCGCGC TGAAACTGGC GGGGCTGCAG
CAGGGCTGGC AGGGCACCGA GCTGGGGCAG TGGCCGGTGT TCGGCGCCGA CCTGCAGCGC
CTGCTGAGTG AGGCCGGCGA GAGTGATCAG GAGCGCCCGC TGACCCTGAC CAGCGCGGCG
CGCTACTACG AAGTGCGGGT GCGCGCCATC GAACGCACCA CTCGCCACGG CCCGACCCTG
CTGGGCCATA TGCTCTACGT ACGCGACGTG ACCCAGCGCC ACCTCAGCGA GCTCAAGCTG
GCCGAGGCCC TGGCCCTGAG TGAAGAGCGT CTGCGCACCA TCTCGAATCT GCACGAGCAA
CTGCGCGAGC AGGCGCTGTG CGACCCGCTG ACCGGCCTCT ACAACCGTCG CTATCTGGAT
GAGTTCTTCT CGCGCGAACT GGCCAGGGCG CAACGCGAGA ACCTGCCACT GGCCTTGGCG
CTGATCGATC TGGACCACTT CAAACGGCTC AACGACGAGT GCGGCCACCT GGTCGGCGAC
GACGTGCTCA AGGCCGTCGC CAAGCATCTG CTGGACAACC TGCGCAGCAC CGATGCGGTG
TTTCGTATCG GCGGCGAGGA ATTCCTGCTG ATCCTGCCGG GGGTCGACCC TGTCGAGGCC
TGCGAACGCC TGCAGAACAT CTGCTCGCAG TTGGCCGGAC AGAGCATCGC CACGCGCGGC
GGCGATCAGC AGGTGACGCT GTCAGCCGGC CTGGCCCATT GGCCGCAGCA GGGAGTCGTG
CTTGAGGAGC TCCTGCATGC TGCCGATGCG GCGCTCTATC AGGCCAAACG GGGTGGGCGA
AACCGCGTTT GTTGTGCAGT CGGTAACGCC CGCGTCAGCC ATCCATCCCG CTAG
 
Protein sequence
MQACLASGWS LSPPVLMTLL VCFGVVLLAH WVTRQRDFPG RDSFILLHLA SLWWMGAAAL 
EMSFFAAECK MFWASMAWPG IVSTPTFWAV FLWQYVNSMR TPLPRSSILG LSLVPLLVWA
LALSNPWHGL FYGAGSAPVD DSLGAPVRYQ HGPLFYATAV YVYLFMAFCM GVVSRAAALS
QGLHRRHYLA FVLVTAVPWV ANIGYVVFGW TLFGFDPTPF SFAFTLVAFS WLIVGVRLFD
LLPVARHLLL EALLDPVLVI DPRGRVIEAN PAALKLAGLQ QGWQGTELGQ WPVFGADLQR
LLSEAGESDQ ERPLTLTSAA RYYEVRVRAI ERTTRHGPTL LGHMLYVRDV TQRHLSELKL
AEALALSEER LRTISNLHEQ LREQALCDPL TGLYNRRYLD EFFSRELARA QRENLPLALA
LIDLDHFKRL NDECGHLVGD DVLKAVAKHL LDNLRSTDAV FRIGGEEFLL ILPGVDPVEA
CERLQNICSQ LAGQSIATRG GDQQVTLSAG LAHWPQQGVV LEELLHAADA ALYQAKRGGR
NRVCCAVGNA RVSHPSR