Gene Pmen_0472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0472 
Symbol 
ID5108391 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp503101 
End bp503850 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content65% 
IMG OID640501685 
ProductSPFH domain-containing protein/band 7 family protein 
Protein accessionYP_001185974 
Protein GI146305509 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTTCG AATTGAGTTT TCTGTCACTG GCAATCATCG TCCTGGCCCT GCTCGCCTCG 
GCGTTTCGCA TCCTGCGCGA ATACGAGCGC GGCGTGGTGT TTCAGCTCGG CCGCTTCTGG
CGGGTCAAGG GACCGGGGCT GATCCTGGTC ATCCCCGGTC TGCAGCAGAT GGTGCGGGTG
GACCTGCGTA CCCTGGTGCT GGACGTGCCG ACCCAGGACG TGATCTCCCG CGACAACGTC
TCGGTCAAGG TCAATGCGGT GGTCTATTAC CGCGTGCTCG ACCCGCAGCG GGCGATCATC
CAGGTCGAGG ATTACCACTC GGCCACCAGT CAGCTGGCAC AGACCACCCT GCGCGCCGTG
CTCGGCAAAC ACGAGCTGGA CGACATGCTC GCCGAGCGCG AGCGGCTCAA CGTGGACATC
CAGCAGGTGC TCGACGCGCA GACCGATGCC TGGGGCATCA AGGTGGCGAA CGTCGAGATC
AAGCACGTCG ACCTGGATGA GTCGATGGTG CGCGCCATCG CCAGGCAGGC CGAGGCCGAG
CGCGAGCGGC GGGCCAAGGT GATTCACGCC GAAGGCGAAC TGCAGGCCGC GGAGAAGCTC
ATGCAGGCCG CCGAAATCCT CGGCCGGCAG AGCGGCGCCA TGCAGCTGCG CTACATGCAG
ACCCTGGGCA GCATCGCCAG TGACAAGAGC TCGACCATCG TCTTCCCGCT GCCGGTGGAG
CTGTTGCAGG GAATCGCCGA GAAGAAGTAG
 
Protein sequence
MGFELSFLSL AIIVLALLAS AFRILREYER GVVFQLGRFW RVKGPGLILV IPGLQQMVRV 
DLRTLVLDVP TQDVISRDNV SVKVNAVVYY RVLDPQRAII QVEDYHSATS QLAQTTLRAV
LGKHELDDML AERERLNVDI QQVLDAQTDA WGIKVANVEI KHVDLDESMV RAIARQAEAE
RERRAKVIHA EGELQAAEKL MQAAEILGRQ SGAMQLRYMQ TLGSIASDKS STIVFPLPVE
LLQGIAEKK