| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0458 |
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| Symbol | |
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| ID | 5108377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 487008 |
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| End bp | 489008 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501671 |
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| Product | transketolase |
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| Protein accession | YP_001185960 |
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| Protein GI | 146305495 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCC GTCGTGAGCG AGCCAATGCC ATTCGTGCCC TCAGCATGGA TGCCGTGCAG
AAAGCCAACA GCGGCCACCC GGGTGCCCCC ATGGGCATGG CGGACATCGC CGAGGTGCTG
TGGCGCGACT ACCTCAAGCA CAACCCGAGC AACCCGAATT TCGCCGATCG TGACCGCTTC
GTGCTGTCCA ACGGCCATGG TTCGATGCTG ATCTACTCGC TGCTGCACCT GACCGGCTAC
GACCTGGGCA TCGAGGATCT CAAGCAGTTC CGCCAGCTGC ACAGCCGCAC CCCGGGCCAC
CCGGAATACG GCTACACCCC GGGCGTGGAG ACCACCACCG GTCCGCTCGG CCAGGGCATC
GCCAACGCTG TCGGCTTCGC CATCGCCGAG AAGGTGCTGG GTGCGCAGTT CAACCGCGAC
GGCCACCAGA TCGTCGATCA CTTCACCTAC GTGTTCCTCG GCGACGGCTG CATGATGGAA
GGCATCAGCC ATGAAGTCTG CTCGCTGGCC GGCACCCTGG GCCTGGGCAA GCTGATCGCC
TTCTACGACG ACAACGGCAT CTCCATCGAC GGCGAGGTCG AGGGCTGGTT CACCGACGAC
ACGCCCAAGC GCTTCGAGTC CTACGGCTGG CAGGTGATCC GCAACGTCGA CGGCCATGAC
GCCGACGAGA TCAAGATGGC CATCGACACC GCGCGCAAGA GCGCGGACCA GCCGACCCTG
ATCTGCTGCA AGACCACCAT CGGCTTCGGC TCGCCGAACA AGCAGGGCAA GGAAGAGTGC
CACGGCGCGC CGCTGGGCAA TGACGAAATC GCCCTGACCC GTGCGGCCCT GAACTGGAAC
CATGGCCCGT TCGAAATTCC GGCCGAGATC TACGCCGAGT GGGACGCCAA GGCTGCCGGT
GCTGCCGCCG AAGCCGCCTG GAACGAAAAA TTCGCCGCTT ACGCCGCTGC GTTCCCCGAG
CTGGCTGCCG AGTTCAAGCG CCGTATCGCT GGCGAGCTGC CGGCCGATTT CGCCGAGAAG
GCTGCCGCCT ATATCAAGGA CGTCGCCGAG AAGGGCGAGA CCATCGCCAG CCGCAAGGCC
AGCCAGAACG CGCTGAACGC CTTCGGCCCG CTGCTGCCGG AGTTCCTCGG CGGCTCGGCC
GACCTGGCCG GCTCCAACCT GACCCTGTGG AAGGGCTGCA AGGGCGTCAC CGAAGAGGAC
GCTGCCGGCA ACTACCTGTT CTACGGCGTG CGCGAATTCG GCATGAGCGC GATCATGAAC
GGCATCGCCC TGCACGGCGG CTTCGTGCCG TACGGCGCGA CCTTCCTGAT CTTCATGGAA
TACGCGCGCA ACGCCGTGCG CATGTCGGCG CTGATGAAGC AGCGCGTGCT CTACGTGTTC
ACCCACGACT CCATCGGCCT CGGCGAAGAC GGCCCGACCC ACCAGCCGAT CGAGCAGCTG
GCCAGCCTGC GCGGCACGCC CAACCTCGAC ACCTGGCGTC CATGCGACGC GGTGGAATCA
GCGGTGGCCT GGAAGCACGC CATCGAGCGC GCCGACGGCC CCAGCGCCCT GGTGTTCAGC
CGTCAGAACC TGCCCCACCA GACGCGCGAC GCCCAGCAAC TGGCCGACAT CGCCCGTGGC
GGCTACGTGC TCAAGGACTG CACCGGCGAG CCGGAACTGA TCCTGATCGC CACCGGTTCG
GAAGTCGCCC TGGCCATGCA GGCCGCCGCC AAGCTGGACG AGCAGGGCCG CAAGGTGCGC
GTGGTTTCCA TGCCGTCGAC CAGCGTGTTC GACGCCCAGG ACGCCGCCTA CAAGCAGGCC
GTGCTGCCGC TGCAGGTCGG TGCACGCATC GCCATCGAAG CCTCGCATGC CGACTACTGG
TACAAGTACG TGGGCCTGGA CGGCCGCATC ATCGGCATGA CCAGCTTCGG CGAGTCGGCC
CCGGCCCCGG CGCTGTTCGA GCACTTCGGT TTCACCGTCG AGAACATCGT CGTTACCGCC
GAAGAGCTGC TGGACGCCTG A
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| Protein sequence | MPSRRERANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WRDYLKHNPS NPNFADRDRF
VLSNGHGSML IYSLLHLTGY DLGIEDLKQF RQLHSRTPGH PEYGYTPGVE TTTGPLGQGI
ANAVGFAIAE KVLGAQFNRD GHQIVDHFTY VFLGDGCMME GISHEVCSLA GTLGLGKLIA
FYDDNGISID GEVEGWFTDD TPKRFESYGW QVIRNVDGHD ADEIKMAIDT ARKSADQPTL
ICCKTTIGFG SPNKQGKEEC HGAPLGNDEI ALTRAALNWN HGPFEIPAEI YAEWDAKAAG
AAAEAAWNEK FAAYAAAFPE LAAEFKRRIA GELPADFAEK AAAYIKDVAE KGETIASRKA
SQNALNAFGP LLPEFLGGSA DLAGSNLTLW KGCKGVTEED AAGNYLFYGV REFGMSAIMN
GIALHGGFVP YGATFLIFME YARNAVRMSA LMKQRVLYVF THDSIGLGED GPTHQPIEQL
ASLRGTPNLD TWRPCDAVES AVAWKHAIER ADGPSALVFS RQNLPHQTRD AQQLADIARG
GYVLKDCTGE PELILIATGS EVALAMQAAA KLDEQGRKVR VVSMPSTSVF DAQDAAYKQA
VLPLQVGARI AIEASHADYW YKYVGLDGRI IGMTSFGESA PAPALFEHFG FTVENIVVTA
EELLDA
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