| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0429 |
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| Symbol | |
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| ID | 5106937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 453606 |
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| End bp | 456260 |
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| Gene Length | 2655 bp |
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| Protein Length | 884 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640501644 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001185933 |
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| Protein GI | 146305468 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAA TAATAAATAA TGATTTCCCG GTCGCTAAGG TCGGAGCGGA TCAAATTACG
ACTCTAGTAA GTGCCAAAGT TCATAGTTGC ATATATCGGC CAAGATTGAG TATCGCGGAT
GGAGCCGCTC CCAGAGTATG CCTTTACAGA GCCCCACCTG GATATGGGAA AACCGTTGCT
CTTGCGTTCG AGTGGCTACG CCACAGAACA GCCGGACGTC CTGCAGTGTG GCTTTCTTTA
AGAGCCAGTT CTTACAGTGA ATTTGATATC TGCGCAGAGA TTATTGAGCA GCTTGAAACT
TTCGAAATGG TAAAATTCAG CCGTGTGAGA GAGGGTGTGA GCAAGCCTGC GCTCTTGCGA
GACCTTGCAT CTAGTCTTTG GCAGAGCACC TCGAATAACG AGATAGAAAC GCTAGTTTGT
TTGGATAATA TTAATCATGA CTTAGACTTG CCGTTGTTGC ACGCACTTAT GGAGTTTATG
TTAAATACAC CAAAAAATAT CAGGTTTGCA GTTGCAGGCA ATACAATAAA AGGGTTCTCG
CAGCTTAAAC TTGCAGGCGC TATGCGGGAG TACACCGAGA AAGACTTGGC CTTTAGCGCA
GAAGAGGCGG TGGCGGTGGC GTTAGCGGAG GCAGAGTCTG TTCTTGGAGT TCCTGAAGAA
CAGATAGAGA CCTTGGTGCA AGAAGTTGAG GGGTGGCCTG CTCTTGTGGT TTTTTTGTTA
AAGCGTGAGT TGCCGGCCAA GCATATTTCA GCAGTAGTTG AAGTAGACAA TTACTTTAGG
GATGAAATAT TTGAGGCGAT TCCCGAGCGC TATCGTGTTT TTCTTGCAAA TTCTTCATTG
CTCGATTTCG TGACGCCTGA TCAATACAAT TATGTATTCA AATGCGTCAA TGGGGTCTCA
TGTATTAAGT ATTTAAGCAC TAATTACATG TTGCTTCGCC ATGTGAGCGG TGAGCCAGCG
CAGTTTACAC TGCATCCAGT ACTGCGTAAT TTTCTACGAG AAATTACTTG GACCGAAAAT
CCTGCTAAAA GATCCTACCT GCTTAAGCGT GCAGCTTTCT GGCATTGGCG TAGAGGTGAA
TACCAGTATG CAATACGAAT ATCCCTACGG GCGAATGACT GTCGCTGGGC AGTCAGCATG
TCTGAGAGAA TAATTTTAGA TTTGTCATTT CGTCAGGGCG AAATAGATGC GCTGAGACAG
TGGCTGTCAG AGCTGCCGAA GCAGGCCTGG CACAAAAAAC CCATAGTGCT TATTAGTTAC
GCGTGGGTAT TGTATTTCAG TCAGCAAGGC GCGCGAGCAG AGAAGTTAAT TAAAGACCTA
TCTTCACAAT CCGATAAAAA AAATAAATGG CAAGAAAAGG AATGGCTGCA GCTTGTGCTT
GCAATAGGTA AAGCAACGAA AGATGAAATG CTTTCGAGTG AGGAGCTCTG TAATAAGTGG
ATTAGTTTAT TTGGGGATTC AAACGCAGTT GGAAAAGGGG CCGCGCTAAC CTGTTTGGCT
TTTATTTTTG CCAGTGAGTA TAGATTTGCA GAGTTGGAGA AGGTGCTGGC TCAGGCCCAA
GCCGTGAATA AATTTGCAAA ACAAAATTTT GCTTTTGGTT GGCTGTATGT CGCGAGGTTT
CAACAAGCCC TAGCAAGCGG AAAAATGGGC TGGGCGAGGC AGATTATAAC TCAAGCACGC
ACAGACAGTC GCGCGCAGAT GATGGAATCC GAGTTTACTT CGAAAATGTT TGACGCTCTA
GAGCTTGAGT TACATTATGA ATTGCGCTGC TTGGACACCT CAGAAGAAAA GCTCTCCAAA
ATTTTAGAGT TCATTTCCAA TCACGGGGTG ACAGACGTGT TTTTTTCCGT ATGCCGTGCT
GTGTCAGCTT GGCGGCTTGG AAGGAGTGAC CTAAATGGCT CCATTGAGAT ATTGGAGTGG
GCGAAGGCGC ATGCGGTTGA AAAAAATCTA CCAAGATTGG AAGTTATGAG CCAAATTGAG
ATCTATCAGC GCTTAGTCTG TCAAGGCATA ACGGGCATAA ATAATTTAAA AACTCTTGAA
GATCATAAGA TTTTCTCCGG ACAGCACTCA GCCCCCCTAA AAGCACGCCT GCTGCTTGTT
CAATCACTAG TGCTTTCCCG AGATCAGAAC TTTCATAGTG CCGCGCACAG AGCGTTATTG
GCTATTCAGC AAGCCCGTAA AATTAACGCG GGCCAGCTGG AAGTCCGTGG ATTATTGTGT
TTGGCCGGAG CGCAGGCAGG TGCCGGTGAT TTAAAAAAGG CTCAGCTTAA CATTGTTTAT
GCAGTGGAGA TAGCAAAACA GCTTCAATGC TTTCAAACAG TTCTTGATGA AGTATGTTTA
ATTGAGCGAA TAATACCGGC TTCATGTGAA GCCTTCACAG CAGTTAATTT AGATCAAGCG
ATTGGGGCTT TTAGTCTTCC GCGAATAGTT GAGATTGGAA AGTCCGCAGA GAATAAAGCT
GACGCTTTAT TGACACGGAA GCAGATTGCT GTCTTGAGGC TTGTAAAAGA GGGGTGCTCA
AACAAACAAA TAGCAACAAA TATGCATGTC ACCGAAGATG CTATAAAGTG GCATATGAGG
AAAATATTTG CCACCTTGAA TGTAGTGAAT CGCACGCAAG CAACAATTGA AGCTGAGCGT
CAAGGAATTA TCTAA
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| Protein sequence | MKIIINNDFP VAKVGADQIT TLVSAKVHSC IYRPRLSIAD GAAPRVCLYR APPGYGKTVA
LAFEWLRHRT AGRPAVWLSL RASSYSEFDI CAEIIEQLET FEMVKFSRVR EGVSKPALLR
DLASSLWQST SNNEIETLVC LDNINHDLDL PLLHALMEFM LNTPKNIRFA VAGNTIKGFS
QLKLAGAMRE YTEKDLAFSA EEAVAVALAE AESVLGVPEE QIETLVQEVE GWPALVVFLL
KRELPAKHIS AVVEVDNYFR DEIFEAIPER YRVFLANSSL LDFVTPDQYN YVFKCVNGVS
CIKYLSTNYM LLRHVSGEPA QFTLHPVLRN FLREITWTEN PAKRSYLLKR AAFWHWRRGE
YQYAIRISLR ANDCRWAVSM SERIILDLSF RQGEIDALRQ WLSELPKQAW HKKPIVLISY
AWVLYFSQQG ARAEKLIKDL SSQSDKKNKW QEKEWLQLVL AIGKATKDEM LSSEELCNKW
ISLFGDSNAV GKGAALTCLA FIFASEYRFA ELEKVLAQAQ AVNKFAKQNF AFGWLYVARF
QQALASGKMG WARQIITQAR TDSRAQMMES EFTSKMFDAL ELELHYELRC LDTSEEKLSK
ILEFISNHGV TDVFFSVCRA VSAWRLGRSD LNGSIEILEW AKAHAVEKNL PRLEVMSQIE
IYQRLVCQGI TGINNLKTLE DHKIFSGQHS APLKARLLLV QSLVLSRDQN FHSAAHRALL
AIQQARKINA GQLEVRGLLC LAGAQAGAGD LKKAQLNIVY AVEIAKQLQC FQTVLDEVCL
IERIIPASCE AFTAVNLDQA IGAFSLPRIV EIGKSAENKA DALLTRKQIA VLRLVKEGCS
NKQIATNMHV TEDAIKWHMR KIFATLNVVN RTQATIEAER QGII
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