| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0420 |
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| Symbol | |
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| ID | 5108342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 442890 |
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| End bp | 444776 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501636 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001185925 |
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| Protein GI | 146305460 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTTG CCTCCCTCGG TCTCTCCGAG GCTTTAGTCC GTGCGGTCGA AGCCGCCGGC
TACACCCAAC CCACTCCGGT GCAACAGCGG GCCATTCCCG CCGTGTTGCA AGGTCGCGAT
CTGATGGTGG CGGCCCAGAC GGGTACTGGT AAGACGGGCG GTTTCGCCCT GCCCATTCTC
GAGCGCCTGT TCCCGGACGG TCACCCGGAT CGCGAACAGC GCCACGGCCC GAAACAACCG
CGCGTACTGG TGCTGACACC GACCCGCGAG CTGGCCGCCC AGGTGCATGA CAGCTTCAAG
CTGTATGCCC GTGACCTGAA ATTCGTCAGC GCCTGCATCT TCGGCGGCGT TGGCATGAAC
CCGCAGGTTC AGGCGCTGGC CAAGGGTGTC GACGTGCTCG TGGCCTGCCC AGGTCGCCTG
CTCGACCTGG CCAACCAGAA AGCCATCGAC CTGTCGCATG TGGAAATTCT CGTGCTCGAT
GAAGCCGACC GCATGCTCGA CATGGGCTTC ATCCACGACG TCAAGAAGGT GCTGGCCAAG
CTGCCAGCCA AACGCCAGAA CCTGCTGTTC TCGGCCACCT TCTCCAAGGA CATCACCGAC
CTCGCCGGCA AGTTGCTGCA CAACCCCGAA CGCATCGAGG TGACGCCGCC GAACACCACG
GTCGAGCGTA TCGAACAACG CGTCTTCCGC CTGGCCGCCA GCCACAAGCG CGCCCTGCTC
GCTCACCTGA TCACCCAGGG CGCCTGGGAA CAGGTGCTGG TATTCACCCG CACCAAGCAC
GGCGCCAACC GCCTCGCCGA ATACCTCGAG AAACACGGCC TGCCGGCTGC CGCGATTCAT
GGCAACAAGA GCCAGAACGC CCGCACCAAG GCGCTGGCCG ACTTCAAGGC GAACAAGGTG
CGCATCCTGG TGGCCACCGA TATCGCCGCC CGCGGCCTGG ATATCGACCA ACTGCCGCAC
GTGGTCAACT TCGAGCTACC CAACGTCGAG GAAGACTACG TCCACCGTAT CGGCCGTACC
GGTCGCGCCG GCCGTAGCGG CGAGGCCATC TCGCTGGTCG CCCCGGATGA AGAGAAGCTG
CTGAAAAGCA TCGAGCGCAT GACCAAGCAG AAGATCCCCG ATGGCGATCT GATGGGTTTC
GATGCCAGCG CCGTGGAAGC GGAGCGCCCG GAAGTGCGCG AACCGCGTCA ACCACGCAAT
GCCGGGCAGA AGAAGCAGAA GGCCGAAGGC GGCGACAAGC CCAAGGGCGA GCGCCACGGC
AGCGGCCGCA AGGACAAGGG CAAGGACAGC GGCAAGGAGC AGAAGGCCAA GCCGCAAGGG
CAGAAGCGCC GTGGCCAGGG CCCGCGCAAC GATGGCCCGA GCCAGCCCGC CGCCGCGATT
CCACCGTTGC CTCCGGATCG CGATCCGGAA GAATTTCTCG ACGACGAAAT CGACAACTTC
GGCAACCGTG TCGACTACGT CAGTCCCAAC CAGAACAAGC AGCAGGGCCG TGGCCGTCGT
CCCGGCGCCG CACCCGCCAA TGGCGCGCCG CAGGGCCAGC GTCAGAACGG CAAGGGTCCG
CGCAACAACA ATGGCGGCGG CAATGGTGCG GGCAAGAACC GTCGCCAGGG CAGCGGCCAG
GGCGGACAAC CCGGCCAGGG CCGCAACGGC AGCAATCGTG GTCGTGGCCG TCCCGCCCAT
GACGGTCGCA TCACCTCGCT CGACCGCGAC GAACTGCCTC GCACAGAGGC CGCCGTGCGC
AATCCGCGTG AGAAGCAGCC CGTCATCGTG CACAAGGGTT CGCGCCTGGA TCGCTTCCCC
ACCGCCGAGC AGCTCGACGA GCTGAGCAAC AGCACGCGCC CGCGCGGCGA GAAGCCGGCA
CTGCTCACGC GCAACCGCGA CGAGTAA
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| Protein sequence | MSFASLGLSE ALVRAVEAAG YTQPTPVQQR AIPAVLQGRD LMVAAQTGTG KTGGFALPIL
ERLFPDGHPD REQRHGPKQP RVLVLTPTRE LAAQVHDSFK LYARDLKFVS ACIFGGVGMN
PQVQALAKGV DVLVACPGRL LDLANQKAID LSHVEILVLD EADRMLDMGF IHDVKKVLAK
LPAKRQNLLF SATFSKDITD LAGKLLHNPE RIEVTPPNTT VERIEQRVFR LAASHKRALL
AHLITQGAWE QVLVFTRTKH GANRLAEYLE KHGLPAAAIH GNKSQNARTK ALADFKANKV
RILVATDIAA RGLDIDQLPH VVNFELPNVE EDYVHRIGRT GRAGRSGEAI SLVAPDEEKL
LKSIERMTKQ KIPDGDLMGF DASAVEAERP EVREPRQPRN AGQKKQKAEG GDKPKGERHG
SGRKDKGKDS GKEQKAKPQG QKRRGQGPRN DGPSQPAAAI PPLPPDRDPE EFLDDEIDNF
GNRVDYVSPN QNKQQGRGRR PGAAPANGAP QGQRQNGKGP RNNNGGGNGA GKNRRQGSGQ
GGQPGQGRNG SNRGRGRPAH DGRITSLDRD ELPRTEAAVR NPREKQPVIV HKGSRLDRFP
TAEQLDELSN STRPRGEKPA LLTRNRDE
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