| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0416 |
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| Symbol | |
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| ID | 5108338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 439138 |
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| End bp | 440532 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640501632 |
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| Product | citrate transporter |
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| Protein accession | YP_001185921 |
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| Protein GI | 146305456 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG2610] H+/gluconate symporter and related permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00414278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCC TACTCGGAAT TGCGCTCTCG CTGGCGCTGC TCATCTATCT CGCCTACCGC
GGCATCAACG TGCTCATCCT CGCCCCTTTG CTGGCCCTGC TCGCCGTCAT CTGCAGCGGC
GAAGGCGACC GCCTGCTGGG CACCTACACC CAGGTGTTCA TGCACAGCCT GGGCGGCTAC
ATCATCAAGT ACTTCCCGCT GTTCATGCTC GGCGCCATCT TCGGCAAGCT GATGGATGAC
TCGGGCTCCG CCAGGACCAT CGCCTACTGG CTGATCCGCC AGCTCGGCAG CCAGCGCGCG
GTGCTTGCCA TCGGCCTGGC GTGCGGCCTG CTGACCTACG GCGGTGTCTC GCTGTTCGTC
GTCGGTTTCG CCGTATTCCC AATCGCGGCA GCGCTGTTTC GCGAGGCCCA GGTGCCCAAG
CGCCTGATCC CCGGCGCAAT CGCCCTCGGC TCGCTGAGTT TCACCATGAC CGCCCTGCCC
GGCACCCCGG CGATCCAGAA CGCCATTCCG ATGCCGTTCT TCGGCACCGA CGCCTTCGCC
GCCCCCATCC TCGGCCTGAT CGGCGCGCTG ATCATGTTCA TTGGCGGCAT CTCCTGGCTG
GAGTACCGCA CGCGCCAGGC CCGCCGCGCT GGCGAGGGTT ACGGCGACCA CGACGAGCAT
GACGACGCGA CGTCCGGCGA GAAAACCGGC ATGCCGTCGC TGACCGTCGC GCTGGTGCCA
ATCCTGCTGG TGATCGTGGC CAACTTCGTA CTCAGCAAGT ACCTGCTGCC GCAGCTGGAC
AGCAGCTACC TGGCCGAACC CAAGTACGGT TCCACCGAGC TAAGCGCAGT GATCGGGCTG
TGGTCGATCA TCACCGCACT GGTAATGGCC TGCGTCGTGC TCGTGCTGCT CAACTGGAAC
AAGTGGGTCG ACCTGAAAAG CACCATCAAC AAAGGCACCC TCGGTTCGCT GCTGCCGATC
TTCAATACCG CCTCGGAAGT CGGCTACGGC TCGGTCATCG CCTCGCTGGC GGCCTTCGTC
GTGCTGCGCG AATTCATGGT CGGCCTGTCC CCGGACAACA TCCTCATTTC CGAAGCCATC
GTCGTCAACG TACTGGCCGG CATCACCGGT TCCGCCTCCG GCGGCCTGAG CATCGCGCTC
AACACCATGG GCGACACCTA CCTGCAACTC GCCCAGGCGG CCGGTATTTC CCCGGAACTG
CTGCACCGCG TCGCCAGCAT GGCTTCCGGT GGCCTCGACA CCCTGCCGCA CAACGGCGCC
GTGGTCACCC TGCTGGCCAT CTGCGGCCTG ACTCACCGCA GCTCCTATGC GGACATTTTC
ATGGTCACCA TTCCACCGAC CATCGCCGGC CTGGCCGTGG TGATCACGCT CGGTACGCTG
TTCGGCTCCT TCTGA
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| Protein sequence | MAGLLGIALS LALLIYLAYR GINVLILAPL LALLAVICSG EGDRLLGTYT QVFMHSLGGY
IIKYFPLFML GAIFGKLMDD SGSARTIAYW LIRQLGSQRA VLAIGLACGL LTYGGVSLFV
VGFAVFPIAA ALFREAQVPK RLIPGAIALG SLSFTMTALP GTPAIQNAIP MPFFGTDAFA
APILGLIGAL IMFIGGISWL EYRTRQARRA GEGYGDHDEH DDATSGEKTG MPSLTVALVP
ILLVIVANFV LSKYLLPQLD SSYLAEPKYG STELSAVIGL WSIITALVMA CVVLVLLNWN
KWVDLKSTIN KGTLGSLLPI FNTASEVGYG SVIASLAAFV VLREFMVGLS PDNILISEAI
VVNVLAGITG SASGGLSIAL NTMGDTYLQL AQAAGISPEL LHRVASMASG GLDTLPHNGA
VVTLLAICGL THRSSYADIF MVTIPPTIAG LAVVITLGTL FGSF
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