Gene Pmen_0412 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0412 
Symbol 
ID5108334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp433950 
End bp434675 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content66% 
IMG OID640501628 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001185917 
Protein GI146305452 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTAT CCCGCTTCTT TATCGATGCC CCGCTCTCCC TCGGTCAACA CGACCTGCCC 
GAGGCGCAGG CCCATTACAT AGGCCGCGTG CTGCGCCACG CAGTGGGTGA CGCCCTGCAG
TTGTTCGACG GCAGCGGCCA GGAATACCTC GGCGAGCTGA TCGAAGTGGG CAAGAAGAGC
GTGCGCGTCG AACTGCGCGA AGCCATCGCC GGGATGAGTG AATCCCCGCT GCGCATCCAC
CTCGGCCAGG GCCTGTCGCG CGGCGAGCGC ATGGACTGGG CCATCCAGAA AGCCACCGAG
CTTGGCGCAG CGGAGATCAC ACCGATTGTC TCGGCGCGCT GCGAAGTACG CCTGAAAGAC
GAACGTGCCG ACAAGCGCAT GGCCCACTGG CGCCAGGTGG CAATCAGCGC CTGCGAGCAA
TGCGGCCGCT CGGTGCTGCC GCTGATCAAC CCACCGCTGG AACTGGCCGC CTGGCTGCAG
CAGATCGAAG CCGATCTGAA GCTGGTGCTG CACCCGGTTG CAGCCCCCCT GCAAAGCCAC
GACAAACCGA ATAGCCTGGC CTTTCTGGTC GGCCCGGAAG GCGGTTTGAG CGAAGCAGAA
GTGGACCAGA CCAAAGCCGC CGGCTTCCAT GCCGCCCGCC TGGGGCCACG CGTTCTGCGC
ACGGAAACGG CCCCCGTGGT GGCCCTGAGC GTCGCCCAAC AGCTCTGGGG CGACCTCCAG
GCGTAA
 
Protein sequence
MRLSRFFIDA PLSLGQHDLP EAQAHYIGRV LRHAVGDALQ LFDGSGQEYL GELIEVGKKS 
VRVELREAIA GMSESPLRIH LGQGLSRGER MDWAIQKATE LGAAEITPIV SARCEVRLKD
ERADKRMAHW RQVAISACEQ CGRSVLPLIN PPLELAAWLQ QIEADLKLVL HPVAAPLQSH
DKPNSLAFLV GPEGGLSEAE VDQTKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDLQ
A