Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0412 |
Symbol | |
ID | 5108334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 433950 |
End bp | 434675 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640501628 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001185917 |
Protein GI | 146305452 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTAT CCCGCTTCTT TATCGATGCC CCGCTCTCCC TCGGTCAACA CGACCTGCCC GAGGCGCAGG CCCATTACAT AGGCCGCGTG CTGCGCCACG CAGTGGGTGA CGCCCTGCAG TTGTTCGACG GCAGCGGCCA GGAATACCTC GGCGAGCTGA TCGAAGTGGG CAAGAAGAGC GTGCGCGTCG AACTGCGCGA AGCCATCGCC GGGATGAGTG AATCCCCGCT GCGCATCCAC CTCGGCCAGG GCCTGTCGCG CGGCGAGCGC ATGGACTGGG CCATCCAGAA AGCCACCGAG CTTGGCGCAG CGGAGATCAC ACCGATTGTC TCGGCGCGCT GCGAAGTACG CCTGAAAGAC GAACGTGCCG ACAAGCGCAT GGCCCACTGG CGCCAGGTGG CAATCAGCGC CTGCGAGCAA TGCGGCCGCT CGGTGCTGCC GCTGATCAAC CCACCGCTGG AACTGGCCGC CTGGCTGCAG CAGATCGAAG CCGATCTGAA GCTGGTGCTG CACCCGGTTG CAGCCCCCCT GCAAAGCCAC GACAAACCGA ATAGCCTGGC CTTTCTGGTC GGCCCGGAAG GCGGTTTGAG CGAAGCAGAA GTGGACCAGA CCAAAGCCGC CGGCTTCCAT GCCGCCCGCC TGGGGCCACG CGTTCTGCGC ACGGAAACGG CCCCCGTGGT GGCCCTGAGC GTCGCCCAAC AGCTCTGGGG CGACCTCCAG GCGTAA
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Protein sequence | MRLSRFFIDA PLSLGQHDLP EAQAHYIGRV LRHAVGDALQ LFDGSGQEYL GELIEVGKKS VRVELREAIA GMSESPLRIH LGQGLSRGER MDWAIQKATE LGAAEITPIV SARCEVRLKD ERADKRMAHW RQVAISACEQ CGRSVLPLIN PPLELAAWLQ QIEADLKLVL HPVAAPLQSH DKPNSLAFLV GPEGGLSEAE VDQTKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDLQ A
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