Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0401 |
Symbol | |
ID | 5108323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 416778 |
End bp | 417674 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640501617 |
Product | TonB family protein |
Protein accession | YP_001185906 |
Protein GI | 146305441 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCAG CAGCCTCCCC AACCAGCGCG CCCTCCGCCA CCGTCCGACC GGCGGATCGC CTCGGGTTCA CCCTCTTTCT TGCCGCCGCA CTGCACGTAG CGGTGATTCT TGGCGTCGGC TTCACCCTGG AGTCGCCACC GGAAATCAGC AAGACACTGG AAATCACCCT GTCCACCTTC AAGAGCAAAA AAGCACCGGA CAAGGCCGAT TTCCTCGCTC AGGACAACCA GCAAGGCAGC GGCACCCTGG AGCATACCGC CGCACCGAAG ACCACCGAGC AGGCGCCCTT TCAGGACAGC GAGGTGCGCA AGGTCACGCC GCCCGCCACG CCGCAGCAGC CCGCCACCCG ACAGGAGGCG CCCAAGGCCG CCGTCGCCAC CCGCGCCCCG CAGCAGCAGA AGACGCCAGT CAAACGCGAG GAAGCCAAGC CGGTTGCGAC AACGCGCCCG GCGCCGGTAT TCGACGCTGC CCAACTGTCC GCCGAGATAG CCAGCCTGGA AGCGGAACTG GCGCAGGAGG TGCAGGCCTA TGCCAAGCGC CCGAAGATTC ATCGCCTCAA CGCGGCCTCG ACCACGCGCG ACAAGGGCGC CTGGTACAAG GACGAGTGGC GCAAGAAGGT CGAACGCATC GGCAACCTCA ACTACCCCGA CGACGCCCGC CGCCAGCGCA TCTATGGCAG CCTGCGCCTG CTGGTGTCGA TCAACCGCGA CGGTTCGCTG TATGAAGTAC AGGTGCTGGA ATCATCCGGC CAGGCGGTAC TCGACCAGGC CGCGCAACGC ATCGTGCGCC TGGCCGCGCC CTATGCCCCC TTCACCGGCG ACCTGGCCGA TATCGACCGC CTGGAAATCA TCCGAACCTG GCGCTTCGAG CGCGGCGATC GACTGTCGAG CAACTAG
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Protein sequence | MNAAASPTSA PSATVRPADR LGFTLFLAAA LHVAVILGVG FTLESPPEIS KTLEITLSTF KSKKAPDKAD FLAQDNQQGS GTLEHTAAPK TTEQAPFQDS EVRKVTPPAT PQQPATRQEA PKAAVATRAP QQQKTPVKRE EAKPVATTRP APVFDAAQLS AEIASLEAEL AQEVQAYAKR PKIHRLNAAS TTRDKGAWYK DEWRKKVERI GNLNYPDDAR RQRIYGSLRL LVSINRDGSL YEVQVLESSG QAVLDQAAQR IVRLAAPYAP FTGDLADIDR LEIIRTWRFE RGDRLSSN
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