| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0392 |
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| Symbol | |
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| ID | 5108314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 408370 |
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| End bp | 409032 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501608 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001185897 |
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| Protein GI | 146305432 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.339275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCAC TGCCCTGGCA CCAGATCGAC ACCGTCCTGC TGGACATGGA CGGCACCCTG
CTCGACCTGC ACTTCGACAA CCACTTCTGG CTAACCCACC TGCCGCAGCG CTACGCCGAG
CACCATGGCA TCAGCCTGGC ACTGGCCGAG GCCGAACTGC TGCCGCTGTT TCGCCAGCAT
GCCGGTACGC TGAACTGGTA CTGCACGGAC TTCTGGAGCC GCGAGCTGCG GCTGTCGATC
CGCGACCTCA AGCGCGAGGT CGCGCACCTG ATCGCCCTGC GCGCGGATGC TGAGCTGTTT
CTGCGCGCCC TGCGAGAAGC GGGCAAGCGC GTGGTGCTGA TCACCAACGC GCACCGCGAT
TCGCTGTCGC TGAAACTGGA ACGCGTCGAG CTGGCGCCCT GGTTCGAACG CCTGATCAGC
TCCCACGACT ACGGCTTTCC CAAGGAGAAC CAGCAGTTCT GGTTCGCCCT GCGTCAGGAC
ACGGACTTCG ATCCGGCGCG CAGCCTGTTT ATCGACGACA GCCTGCCGAT CCTGCGCAGC
GCCGCACGCT TCGGCGTCGC CCATCTGCTC GCCGTGCGCC AGCCGGACAG CCAGGCCGGG
CCGAAGGACA CCGAGGAATT CGAGGCTGTG GAGGATTACC GCGAACTGCT GCAGGGCCTG
TAG
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| Protein sequence | MPALPWHQID TVLLDMDGTL LDLHFDNHFW LTHLPQRYAE HHGISLALAE AELLPLFRQH
AGTLNWYCTD FWSRELRLSI RDLKREVAHL IALRADAELF LRALREAGKR VVLITNAHRD
SLSLKLERVE LAPWFERLIS SHDYGFPKEN QQFWFALRQD TDFDPARSLF IDDSLPILRS
AARFGVAHLL AVRQPDSQAG PKDTEEFEAV EDYRELLQGL
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