Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0361 |
Symbol | |
ID | 5108283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 372096 |
End bp | 375860 |
Gene Length | 3765 bp |
Protein Length | 1254 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640501577 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001185866 |
Protein GI | 146305401 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCACCG CTTTTTCCCA CCGCCTGCCC AGATGGAGCT GGTGGCTGCC GCTACCGCTT TTCCACTTGG GAACCTGGAT TTCTCTGGCC ACCCGCCTGA ACGACGGGGT GGCCCTGTGT TACCTGCCGC TGGTGCTGGG CCTGGTGCTG TGCCTGTGGT GGGGCCCGCG CGTGCTGCCG GCGCTCTACC TCAACGCCCT GCTCAGCGTC CCGTTGTGGG GCCTGCCCTG GCAATGGGCG CCGCTGTATG CCTTGCCCGA GACGGTCGCC GTGGCGCTGG GCTGGTGGTT GTTGCGACGC CACAGCTTCG ACCCGGCCTT GGGCAGCCTG GCCGATCTGC TGCGTTTTCT CGCATTCGGC GTGCTGGCGC CGGCGGCGCT GGTGGCGTTG GGGTTGCAGG CCAACCTGTG GCTGACCGGC TTGCAGCTCG GCGAGCACTG GGCGCAGGCC AGCCTGGCGG TGTGGCTGAA CGACGCCATC AACCTGCTGG CGCTGGCCAC CCCGCTGCTG GTGTTCGGCA GCCCGCTGCT GCGTGCGCGC GGCTGGCTGC CCGAGAGCAC GGCGGCCGAC GCGCAAGCCC TGAGCATCAG CCGTTCCTGG CGCGGCTGGC TGCTCGCGTT CGGCATCTTC CTGGCGCTGA TGGCACTGGT CGGCAGCCTG CCTCTGCTGG TCGCTCTGCC CTTTCTCGGC ATCGGCATGC TCGCCCTGGC CCTGCGTTAT GCCTTCGCCG GTGCGCTTTA CGGCGCCGTT CTGGTGTTCG CCGCGACCCT GCCGCTGCCG TTGCTGCGCG GCGATCCCGG TTTCGCCATG CTGGATCTGC CGCGCAGCCA GTTGCAGCTG GCCGTGCTGC TGCTGATGGG CGCCGCCCTG CTGGTAGGGC GGGCCCTGGG TGACCTGCGC CAGGCGCTGA GCCGCAGCGC GCGCATGCAG CAGCAACTGG CCCGCGCCAA CCTGGCGATG GAGGCCAGCC CGCTGGGGGT GACCATCGCC GACGCCCGCC AGCCGGACCT GCCATTGGTC TACTGCAACG CCGCCTTCAC CCAGATCACC GGCTACAGCG CAGACGAGAC ACTGGGGCGC AACTGCCGCT TTCTCGTTGC CGACGACCAC GCCCAGCTGG AGCTGCAGCC CCTGCGCAGC GCCTTGCGCG AAGGGCGCAG CGGGCATGCG GTGGTGCGCA ACTACCGCAA GGACGGCCGG CCGTTCTGGA ACGAAGTGGT GCTGGCGCCG ATGCGCGACG AGCGGGGCAT CAGCCATTTC GTCGGCCTGC AGCAGGATGT CACCGAACGC GTGGAGCTGG CGGCGCAGGT CGAGCAGCAG CGCGCGCAGC TGTTGCGCCA GAACCACCTG TTCAGCCAGA CCGAGGACAT CGCCAACCTC GGCGGCTGGG TGTTCGAACT CGGCGATTCC AGCATGTTCT GGAGCGATGG CTGCTATCGC ATCGTCGAGC GCGACATCCA TCTGGGGCCG CCGAGTTTCG AGCAGGCGCT GCACTACTAC GACGCGCCGA GCCAGACGCT GATCATCGAG ACCCTGCAGG CGGCGCTGGG CGGGCTGGAT GAGGTCGATG TGGAGCTGCG TCTGGCGGCG CGCCTCGGCG GGCGCCTGGT GCGGGTGCGC GGCATGGCCG AGCGCGACGA TGACGGCAGC CTGGTGCGGG TGTACGGCGT GGTGCAGGAC ATCAGCGAGC GCAAGCGCAC CGAGTCGCAA CTGCGCGAGC GCGACGAGCG CCTGCGTCTG TTCTTCGAGG CGCCGCTGAT CGGCATGGCG CTGACTACCC AGAGCTTCGG CTGGGAAGAG GTCAACCAGA AGCTGTGCAG CATCCTCGGG CGTAGCCGCG ACGAGCTGAT GGCCAGCAGC TGGCACCAGC TGTCGCATCC CGACGACCTG GCAGGCGAAC AGGCCAGGCT CGAGGAGGTG CTGCTGGGCA GCAGCGACGG TTTCGAGATG GACAAGCGCT TCCTGCGGGC CGACGGCCAG GTGGTGTTCA CTCGCCTCAG TCTGCGTGCG GTCCGCGGCG GCGCAGGCCG GCAGACGCTG TTTCTGCTGC TGGTGGAAGA CACCAGCGCG CGGCGCGAGG CCGAGGCGCG TTACCACACC CTGGTCGAGC ACGCGCCCGA GGCGATCCTG CTGTTCAGCC CGGAGGGCGG CATCGTCGAG TGCAACGAGA ACGCGCTGCA GCTGCTGCGT TACCGCCGCG AAGACCTGCT GGGCAAGACC ATCCAGAGCA TCAGCCCGCC GCGCCAGGCG GACGGCAGTC TGTCTTCGCG CACCGGCAGG GAGCATCTGC AGCGGGCCAT CGCCGGTGAC ACGCCGGTGT TCGAGTGGAC CCATCGCGAC AGTGCCGGAC GCCAGCTGCC ATGCGAGGTG CGCCTGGTGC GCATGCCCGG CGAGGAGCTG CTGATCCGCG CCAGCGTGCT CGACATTTCC GAGCGTCAGC GCTACCAGCG CGAGATCGAG CGGCTGGCCT ACAGCGACGA GCTGACCGGT CTGCCCAATC GCCGTCTGCT GCTCGATCGC CTGCAGCACG CCATGGATCG CGAGAACCGC GAAGGCAGCC TGGGCGCGCT GCTGTTCATC GACCTGGACC ACTTCAAGAC GGTCAACGAC AGCCTCGGCC ACCTGATCGG CGATGCGCTG CTGTGCGAAG TCACCACCCG CCTGGCTCGT GAGCTGCGTA CCGAAGACAC CCTGGCGCGC CTCGGCGGCG ACGAGTTCGT GGTGCTGCTC GAGGCGCTGG GTAGCGAGCC GCAGGCCGTT GCCGAGCATG CCGCCGCGGT GGGCGAGAAG CTGCTGCGCG GGCTGCAGGG CAGTTGCCTG ATCGAGGGGC ACGAGCTGGC CATCAGCGCC AGCATCGGCA TCGCCCTGCA TCCGCTGGGC CTGCAGCGCG CCGCCGATAT CCTCAAGCAG GCCGACACCG CCATGTACCG GGCCAAGCAT GCCGGACGCA ATGCGCTGCA CTTCTTCGCC CCGGAGATGC AGGCGGCCAT CGATCAGCGT CTGCAGCTGC AGGGCGAGCT GCGCCAGGCC ATTGCCCGTC AGCAATTGCA ACTGGTGTTC CAGCCGCAGC TGGTCCTGGC CGACGACACG GTGGCTGGCG CCGAGGTGCT GCTGCGCTGG CTGCACCCCG AACGCGGCGA GATTTCCCCC GACCAGTTCA TTCCGCTGGC CGAGGAGACC GGGCTGATCC AGGACATCGG CCAGTGGGTG CTGGAGCAGT CCTGCGCGAC GCTGGCGCGC TGGCAGGCGC AATGGCCGCA ACTGGTGCTG GCGGTCAATC TCAGCCCGCG CGAGTTGCGC CAGGCCGGTT GCGTGGCGCG CGTCGAGGAT TGCCTGCGTC GCCATGGCGT ACCTGCGCAG GCGCTGGAGC TGGAAATCAC CGAGGGCGTG CTGCTGGAGG ACGTCGACCG CTGCATCGGC AACATGCAGC AGCTCAAGGC GCAGGGCGTG CGTTTTGCCA TCGACGACTT CGGCACGGGC TACTCGTCGC TCACCTACCT CAAGCGCCTG CCGCTGGACC GCCTGAAGAT CGACCGCAGC TTCGTTGCCG ATCTCGATGG CGACGCCAGC GGGCGCATGC TGGTGCAGAC CATCCTGATG ATCGCGCGCA ACCTGGATCT CGAATGCGTG GCCGAGGGCA TCGAGCAGCC CAGCCAGTTG GCGCTGCTGC GTGAGCAGGG CTGCGCGCTG GGCCAGGGCT ATCTGTTCGG CAAGCCGATG GTCGAGGCCG AGTTTCTCGC CTGGCTGCAG GCGCGCCAGG GCTGA
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Protein sequence | MPTAFSHRLP RWSWWLPLPL FHLGTWISLA TRLNDGVALC YLPLVLGLVL CLWWGPRVLP ALYLNALLSV PLWGLPWQWA PLYALPETVA VALGWWLLRR HSFDPALGSL ADLLRFLAFG VLAPAALVAL GLQANLWLTG LQLGEHWAQA SLAVWLNDAI NLLALATPLL VFGSPLLRAR GWLPESTAAD AQALSISRSW RGWLLAFGIF LALMALVGSL PLLVALPFLG IGMLALALRY AFAGALYGAV LVFAATLPLP LLRGDPGFAM LDLPRSQLQL AVLLLMGAAL LVGRALGDLR QALSRSARMQ QQLARANLAM EASPLGVTIA DARQPDLPLV YCNAAFTQIT GYSADETLGR NCRFLVADDH AQLELQPLRS ALREGRSGHA VVRNYRKDGR PFWNEVVLAP MRDERGISHF VGLQQDVTER VELAAQVEQQ RAQLLRQNHL FSQTEDIANL GGWVFELGDS SMFWSDGCYR IVERDIHLGP PSFEQALHYY DAPSQTLIIE TLQAALGGLD EVDVELRLAA RLGGRLVRVR GMAERDDDGS LVRVYGVVQD ISERKRTESQ LRERDERLRL FFEAPLIGMA LTTQSFGWEE VNQKLCSILG RSRDELMASS WHQLSHPDDL AGEQARLEEV LLGSSDGFEM DKRFLRADGQ VVFTRLSLRA VRGGAGRQTL FLLLVEDTSA RREAEARYHT LVEHAPEAIL LFSPEGGIVE CNENALQLLR YRREDLLGKT IQSISPPRQA DGSLSSRTGR EHLQRAIAGD TPVFEWTHRD SAGRQLPCEV RLVRMPGEEL LIRASVLDIS ERQRYQREIE RLAYSDELTG LPNRRLLLDR LQHAMDRENR EGSLGALLFI DLDHFKTVND SLGHLIGDAL LCEVTTRLAR ELRTEDTLAR LGGDEFVVLL EALGSEPQAV AEHAAAVGEK LLRGLQGSCL IEGHELAISA SIGIALHPLG LQRAADILKQ ADTAMYRAKH AGRNALHFFA PEMQAAIDQR LQLQGELRQA IARQQLQLVF QPQLVLADDT VAGAEVLLRW LHPERGEISP DQFIPLAEET GLIQDIGQWV LEQSCATLAR WQAQWPQLVL AVNLSPRELR QAGCVARVED CLRRHGVPAQ ALELEITEGV LLEDVDRCIG NMQQLKAQGV RFAIDDFGTG YSSLTYLKRL PLDRLKIDRS FVADLDGDAS GRMLVQTILM IARNLDLECV AEGIEQPSQL ALLREQGCAL GQGYLFGKPM VEAEFLAWLQ ARQG
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