Gene Pmen_0347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0347 
Symbol 
ID5110316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp355639 
End bp356793 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content63% 
IMG OID640501563 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001185852 
Protein GI146305387 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.89864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTCG CTTCCAGCGC CTACAAAAAA GCCCTCGAGG GAAACCAGAC ACCGAAAGAG 
GTGCTGGTCA AGATCGATCG GGTAACCAAG AAATTCGACG AGACAGTGGC AGTCGACGAC
GTATCGCTGA CCATCAACAA GGGTGAGATC TTCGCCCTGC TCGGTGGCTC GGGATCGGGC
AAATCCACGC TGCTGCGCAT GCTCGCCGGC TTCGAGCGGC CCACCGAGGG ACGCATCATC
CTCGACGGTG TGGACATCAC CGACATGCCG CCCTACCAGC GGCCGATCAA CATGATGTTC
CAGTCCTACG CGCTGTTCCC GCACATGACC GTGGCGCAGA ACATCGCCTT CGGTCTCAAG
CAGGACAAGC TGCCCCAGGC CGAGATCGAC GAGCGCGTGG CCGAGATGCT CAAGCTGGTG
CACATGACCC AGTACGCCAA GCGCAAGCCG CATCAACTCT CGGGCGGTCA GCGTCAGCGC
GTGGCCCTGG CCCGTTCCCT GGCCAAGCGT CCCAAGCTGC TGCTGCTCGA CGAGCCGATG
GGCGCGCTGG ACAAGAAGCT GCGCTCGCAG ATGCAGCTGG AGCTGGTGGA GATCATCGAG
CGCGTCGGCG TGACCTGCGT GATGGTCACC CACGACCAGG AAGAGGCCAT GACCATGGCC
CAGCGCATCG CCATCATGCA CCTGGGCTGG ATCGCCCAGA CCGGCAGCCC GGTGGACATC
TACGAGACGC CGACCAGCCG CCTGGTGTGC GAGTTCATCG GCAACGTCAA CCTGTTCGAC
GGCCAGATCG TCAGCGATGA AGCCGACCAC GCGATCATCG ATTGCCCGCA GCTGGACAAG
CCGATCTACA TCGGCCATGG CGTCAGTACC CGTGCCGAGG ACAAGAAGGT CAGCTACGCC
CTGCGCCCGG AAAAACTGCT GATGGCCACC GCCTTGCCGG CCGACCATGA GCACCCCGAG
TACAACTGGA GCCGTGGCCA CGTGCACGAC ATCGCCTACC TCGGCGGCCA TTCGGTGTAC
CACGTCAAGC TCAGCTCCGG GCAGATCGTG CAGTGCTTCA TCGCCAACGC CGAGCGCCGC
GGCAAGCGCC CGACCTGGGA CGATCCGGTG GTGGTGTACT GGGAAGACGA CAGCGGCGTG
GTACTGCAAT CATGA
 
Protein sequence
MAVASSAYKK ALEGNQTPKE VLVKIDRVTK KFDETVAVDD VSLTINKGEI FALLGGSGSG 
KSTLLRMLAG FERPTEGRII LDGVDITDMP PYQRPINMMF QSYALFPHMT VAQNIAFGLK
QDKLPQAEID ERVAEMLKLV HMTQYAKRKP HQLSGGQRQR VALARSLAKR PKLLLLDEPM
GALDKKLRSQ MQLELVEIIE RVGVTCVMVT HDQEEAMTMA QRIAIMHLGW IAQTGSPVDI
YETPTSRLVC EFIGNVNLFD GQIVSDEADH AIIDCPQLDK PIYIGHGVST RAEDKKVSYA
LRPEKLLMAT ALPADHEHPE YNWSRGHVHD IAYLGGHSVY HVKLSSGQIV QCFIANAERR
GKRPTWDDPV VVYWEDDSGV VLQS