| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0340 |
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| Symbol | |
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| ID | 5110309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 345848 |
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| End bp | 346906 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501556 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001185845 |
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| Protein GI | 146305380 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.988078 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCG CTCTTGCCGC CGCCCTGCTC GGCCTGACCT GCGCCCTGGC TCAGGCCGCC
GACAGCATCC GGGTCTACAA CTGGAACGAT TACATCGCGC CGCAGGTGCT GAACGACTTC
ACCCGCGACA CCGGCATCGC GGTCGAGTAC CACACCTTCG CCAGCGCCGA AGAGCTGAAC
GCCGCGTTGC ACAGCGGCGA GGCCATCGAC GTCGCGGTGC CGTCGCACAA CGACCTGCCG
GCGCTGATCG CCGACGCGCG CATCCAGCCG CTGGACCTGG CCAGACTGCC CAACCGCCAG
CACCTGGACA AACAACTGCT GAGCAAGCTG GCGGCCGTCG ACCCGCAGAA CGGTTATGCC
GTGCCCTATC TGTGGGGCGC GGTAGGCCTG GCGATCAACA CCCCTCAGGC CGAAGCCGCC
TACGGCGGGG CGCTGCCGGG GAGCTGGAGC CTGCTGTTCG ATGCCGAGCA GAGCGCACGC
CTGGCCAAGT GCGGCATCAG CGTGCTGGAT GCGCCGGATG AAACCCTGTC GCTGCTGCTC
AACTACCAGG GCCGTAGCCT CGCCCGCAGC GCACCGAGCC GCGTCGAACG TGCCGGCAGC
GTGCTCGAAG CCCTGCGTCC GCACCTGCGC TATATCGACA GCGAGCGCTA TATCGACGAC
CTCAGCAACG GCCGCCTGTG CCTGGCCATG GCCTGGGTCG GCGACGCCCT GGCCGCTGCT
CAGGCCGGCC AGCCGGTCAG CTTCGTGGTG CCGCAGGAAG GCTCGGTGCT GTTCATCGAC
AACCTGGTGA TTCCCGCCAG CGCCGCGCGC CCGGACCTCG CCCACCGCTT CATCGACTAC
CTGATGCAAC CACAGGTGAT CGCCCGGATC ACCGCCGAAA CGCTCTACCC CAACGGCAAT
GCCGACTCCG TGCAGTTCAT CGACAGCGCC CTGCTGCAGC AACCGGGCCT CTATCCGGAT
CAGGACACCA AACGCCGTCT GTATCCGCTG GAGGTACTCT CGGACAAGCA CGCCCAGGTA
CGCAGCCAGG TCTGGCAACG CTTCCGTGAC GGCAGTTGA
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| Protein sequence | MQRALAAALL GLTCALAQAA DSIRVYNWND YIAPQVLNDF TRDTGIAVEY HTFASAEELN
AALHSGEAID VAVPSHNDLP ALIADARIQP LDLARLPNRQ HLDKQLLSKL AAVDPQNGYA
VPYLWGAVGL AINTPQAEAA YGGALPGSWS LLFDAEQSAR LAKCGISVLD APDETLSLLL
NYQGRSLARS APSRVERAGS VLEALRPHLR YIDSERYIDD LSNGRLCLAM AWVGDALAAA
QAGQPVSFVV PQEGSVLFID NLVIPASAAR PDLAHRFIDY LMQPQVIARI TAETLYPNGN
ADSVQFIDSA LLQQPGLYPD QDTKRRLYPL EVLSDKHAQV RSQVWQRFRD GS
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