| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0318 |
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| Symbol | |
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| ID | 5110288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 327366 |
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| End bp | 329204 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501535 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001185824 |
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| Protein GI | 146305359 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCCT CTTCCGCCTG GCCGGCGCGC CTGGCGCTGG CCTTTCTCCT GCTGGTGCTG
AGCGGCGCCA GCGTACTGCT CTGGCGCCAG ATCGAAGGCG TGCAGCAACA GCGCCTGGAC
GAACGTCTCG GCTACCAGGC CCGTACGCTG GCCCGGCAGC TGGAAAGCAC CCTGTACCTG
GAAGTGGATG GCCTGGAGCG CATCGCCCGG CTATGGAACC GCCTCGGTCG GCTGCCGCGC
GACAGCTGGG AAGAAGAGGC GCAGCGCACC CTGGCCGGCT TTCCCGCCTA CCAGTCGATC
CAGTGGCTGG GCGAGGATCT GCGCATGCGC TGGCTGCTGC CGCTGGCCGG CAACGAGGCG
GCGCTGAGCT TCCGGCTCAC CCCCGACCAC CCCAACTATG CGCTGGCCAT GGAGGCGCGG
GCCACCGGTG AGCAGCGCTT TTCCAACAGT TTCCAGCTGG TCCAGGGCGG CCGTGGCTTC
GTGCTCTACA CCCCGCTGTA CCGCGAACAG GATGGCGTGC GGGTATTCGA CGGTTTCCTC
CAGGGCGTGT TTCGCGTCGA ACCGCTGATG CAGCAGCTGC TGGCCCAGCT CGATCCCGGA
TCCTTCAATG TGGAGCTGCT GGAGGACGGC CAGCGCCTGT TCCGCCACGG CGCTGTGGAA
CAGGCGCCGC AGCGCAGCCT GCAGCTGCCG CTGAGCCTGC TCAACAACCA GGCTTTCAGT
CTGCGCCTGA GCCCCACCCA GGAGCTGCTC GAGCAACTGC ACAGCCCGCT GCCCGGCGTG
GTGCTCGGCG CTAGCCTGGC CATCAGCCTG CTGCTGGTCG CAGCATTGGC CCTGGCCCTG
GAGAACAGCC GGCGAGCCCA GGCCCTGCAG GCTGCGAACC GGCGCTACAA GATCGAGGAA
ACACGCCGCC AGGAGACCGA ACAACGCCTG CACGAGAGCC GCGAACGCCT GCAACTGGTG
CTCGACCTGA CCGATTCCAG CCACGACGGC CTGTTCATCT TCGACACCAC CAGCCGCGAG
CTGCTGCACA TGAACCAGGC CACCTACGCC AGCCTGGGCT ACCGTCCCGA GCAGTTCGCC
CAGCTGCTGC GCAACGATCC GGAAAAGCTG CTGCCCGGCT TTCACCGCTG GCTGGAGCAG
GCACGCCAGG CGCAACGCGA CAACCTCTCG CGGATCTTCC AGCGCGAACT GATCCGCCGT
GACGGCAGCC GCCAGCCGGC CGAGATCAAC ACCCAGCTGG TGCAGCTGCA CGGCCGCGAG
TTCCTCATCG CGGTGTCGCG CGACAACAGC GAGCGCCTGC AACTGGAGGC CCAGCTGCAG
CGCCTGTCGC AGCTCGACGG ACTGACCGGC CTGTACAACC GGCGCTATTT CGACCAGCAG
TTGCCGGCCG AACTGCGCCG CCTGCGGCGC AGCGGCGCGC CACTGGCCCT GCTGATGCTG
GATATCGACC ACTTCAAGGC CTACAACGAC GCCCTTGGCC ACCTGGCCGG CGACGACGCC
CTGCGCAAGG TCAGCAGCGT GCTACGCGAA AGTCTGCAGC GCGAAGGCGA CGTGGCCTGT
CGCTATGGCG GCGAGGAGTT CGCCATCATC CTGGCCAACA CCGGTTTGGA TGGCGGCGAG
CATGTGGCCG CACGCATCCA CGAGGCCATC GCCAGTCTGG CCATCGTCCA CCCTGCCAGC
CCGCTGGGGC GCCTGAGCCT GAGCATCGGC CTGACGGTGC TCGACCCGGT CAGCGACGAA
CAGCCCGGCG AGCTGGTTTC CCGCAGCGAC CAGGCGCTTT ACAGCGCCAA GCATCGCGGC
CGAAACTGCA CCTACCTGTG GCAGCCGCCT GCCGCTTGA
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| Protein sequence | MPASSAWPAR LALAFLLLVL SGASVLLWRQ IEGVQQQRLD ERLGYQARTL ARQLESTLYL
EVDGLERIAR LWNRLGRLPR DSWEEEAQRT LAGFPAYQSI QWLGEDLRMR WLLPLAGNEA
ALSFRLTPDH PNYALAMEAR ATGEQRFSNS FQLVQGGRGF VLYTPLYREQ DGVRVFDGFL
QGVFRVEPLM QQLLAQLDPG SFNVELLEDG QRLFRHGAVE QAPQRSLQLP LSLLNNQAFS
LRLSPTQELL EQLHSPLPGV VLGASLAISL LLVAALALAL ENSRRAQALQ AANRRYKIEE
TRRQETEQRL HESRERLQLV LDLTDSSHDG LFIFDTTSRE LLHMNQATYA SLGYRPEQFA
QLLRNDPEKL LPGFHRWLEQ ARQAQRDNLS RIFQRELIRR DGSRQPAEIN TQLVQLHGRE
FLIAVSRDNS ERLQLEAQLQ RLSQLDGLTG LYNRRYFDQQ LPAELRRLRR SGAPLALLML
DIDHFKAYND ALGHLAGDDA LRKVSSVLRE SLQREGDVAC RYGGEEFAII LANTGLDGGE
HVAARIHEAI ASLAIVHPAS PLGRLSLSIG LTVLDPVSDE QPGELVSRSD QALYSAKHRG
RNCTYLWQPP AA
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